View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_18 (Length: 259)
Name: NF5744_high_18
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 44695907 - 44695665
Alignment:
| Q |
17 |
attatactgaaataattgtttattttttattagatgttctttacaaggactatgttaatcaatcacctattcactttcactaccaattcatggattggaa |
116 |
Q |
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| T |
44695907 |
attatactgaaataattgtttattttttattagatgttctttacaaggactatgttaatcaatcacctattcactttcactaccaattcatggattggaa |
44695808 |
T |
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| Q |
117 |
tgcaggcttctcttgtaaaggtattgtgaacatcaacttagcttatgtttggaactgcggtgatcggtgaaaactgttttagattgcaagaatgagatgg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44695807 |
tgcaggcttctcttgtaaaggtattgtgaacatcaacttagcttatgtttggaactgtggtgatcggtgaaaactgttttagattgcaagaatgagatgg |
44695708 |
T |
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| Q |
217 |
ctaccgcggatccaaacataggcttaatcctttacttttattt |
259 |
Q |
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| T |
44695707 |
ctaccgcggatccaaacataggcttaatcctttacttttattt |
44695665 |
T |
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