View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_23 (Length: 227)
Name: NF5744_high_23
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 39064529 - 39064331
Alignment:
| Q |
12 |
gagatgaataataatggaacaccttatagcaacggtttcctttgtagtactcctgagttgaaaaaacattatgaagcacttgtgaagtctaaggatcagg |
111 |
Q |
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| T |
39064529 |
gagatgaataataatggaacaccttatagcaacggtttcctttgtagtactcctgagttgaaaaaacattatgaagcacttgtgaagtctaaggatcagg |
39064430 |
T |
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| Q |
112 |
tttggtcacctaagcttgaaactattacagaatacaaggttaggttttcaccatgtaggtttatagaatggaaagaaaaagagaagccaatggaattgt |
210 |
Q |
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| T |
39064429 |
tttggtcacctaagcttgaaactattacagaatacaaggttaggttttcaccatgtaggttcatagaatggaaagaaaaagagaagccaatggaattgt |
39064331 |
T |
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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 15021135 - 15021046
Alignment:
| Q |
48 |
ttcctttgtagtactcctgagttgaaaaaacattatgaagcacttgtgaagtctaaggatcaggtttggtcacctaagcttgaaactatt |
137 |
Q |
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| T |
15021135 |
ttcctttgtagtactcctgagttgaaaaaacattatgaaatgcttgtgaagtctaaggatcaggtttggtctcctaagcttgaaactatt |
15021046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 49160726 - 49160817
Alignment:
| Q |
46 |
gtttcctttgtagtactcctgagttgaaaaaacattatgaagcacttgtgaagtctaaggatcaggtttggtcacctaagcttgaaactatt |
137 |
Q |
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| T |
49160726 |
gtttcctttttggtactcctgagttgaataaacattatgaaatgcttgtgaaatctatgaatcagagttggtctcctaagcttgaaactatt |
49160817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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