View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_7 (Length: 431)
Name: NF5744_high_7
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 40657303 - 40657662
Alignment:
| Q |
18 |
gtttaaagcttaaaaaatcatgggcttgttgtgtcatataggctcaacactatatcgggttagagtggtagtaattttctgagtttacttttcacaccac |
117 |
Q |
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| T |
40657303 |
gtttaaagcttaaaaaatcatgggcttgt---gtcatataggctcaatacaataacgggttagagtggtagtaattttctgagtttacttttcacacccc |
40657399 |
T |
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| Q |
118 |
caatatcatattggatgaacaagtctaaaacacaattttttatattgtcatctgaatgaggcaatatcatatagtagactgcaagagattatcactagta |
217 |
Q |
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| T |
40657400 |
caatatcatattggatgaacaagtctaaaaca--attttttatattgtcatctgaat-------------atagtagactgcaagaggttatcactagta |
40657484 |
T |
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| Q |
218 |
tcatattcacacacttgaagtgacacacttttctttatgaggcaattgtagtgacacttaacaactcaaaattaaaatcccattgaagtgggagttatta |
317 |
Q |
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| T |
40657485 |
tcgtattcacacacttgaagtgacacacttttctttatgaggcaattgtagtgacacttaacaactcacaattaaaatcccattgaagtgggagttatta |
40657584 |
T |
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| Q |
318 |
atttacaattaattttctgtaaaacaaataatttacaatcaattaaaggtgtatatatctggtgggatctacacttct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
40657585 |
atttacaattaattttctgtaaaacaaataatttacaatcaattaacggtgtatatatctgaccggatctacacttct |
40657662 |
T |
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