View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_high_9 (Length: 393)
Name: NF5744_high_9
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2381381 - 2381521
Alignment:
| Q |
1 |
ctttattgaataagagtgtgaatattgaaaagaaaccgttaaattaatgaaatgagaatgtgaactataattctccattttttaagaattttaatgagtt |
100 |
Q |
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| T |
2381381 |
ctttattgaataagagtgtgaatattgaaaagaaaccgttaaaataatggaatgagaatgtgaactataattctccattttttaagaattttaatgagtt |
2381480 |
T |
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| Q |
101 |
taatgtgtcaaaatttaaagtaagtgatccacacgacatcc |
141 |
Q |
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| T |
2381481 |
taatgtgtcaaaaattaaagtaagtgatccacatgacatcc |
2381521 |
T |
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Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 222 - 375
Target Start/End: Original strand, 2381601 - 2381754
Alignment:
| Q |
222 |
gcccaactaacaatattgacattatcttgactcaataaacaatattgttaatataagattagatcttcataaaaatatattacaaggttagacatattca |
321 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
2381601 |
gcccaactaacaatattgatattaccttgactcaataaacaatattgatattataagattagatcttcttaaaaaaatattacaaggttagacatattca |
2381700 |
T |
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| Q |
322 |
tctgattttaaaccgtgatcttacagctttgtgtgtaagtttcggatgatgttt |
375 |
Q |
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| T |
2381701 |
tctgattttaaaccgtgattttacaactttgtgtgtaagtttcagatgatgttt |
2381754 |
T |
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