View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5744_low_1 (Length: 786)
Name: NF5744_low_1
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 693; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 1 - 771
Target Start/End: Complemental strand, 35542883 - 35542116
Alignment:
| Q |
1 |
acaatggataacaataactcaacaaaaccacccataaattgatgataactacttagagtagaaagaaagaaaaacactcttaggaaattagggtttgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
35542883 |
acaatggataacaataactcaacaaaaccacccataaattgatgataact---tagagtagaaagaaagaaaatcactcttaggaaattaaggtttgaca |
35542787 |
T |
|
| Q |
101 |
tgagtaactaatcttagtgtagagtatcatttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacagc |
200 |
Q |
| |
|
|||||||||| ||| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35542786 |
tgagtaactagtctcaatgaagggtatcatttaggagcatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacacc |
35542687 |
T |
|
| Q |
201 |
ctcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35542686 |
ttcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtc |
35542587 |
T |
|
| Q |
301 |
caaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaattgaaactttccgcatcacgtggtttgaatttcccttctccatatccca |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
35542586 |
caaccatacggaaatacaaccacggtgttcctcaaaggtgcgcgtgtcaaattgaaacttttcgcatcaagtggtttgaatttcccttctccatatccca |
35542487 |
T |
|
| Q |
401 |
aaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactaccattcccatgtaactggtttgcattctgtagtatcacatcaacaatctcatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35542486 |
aaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactaccattcccatgtaactggtttgcattctgtagtatcacatcaacaatctcatc |
35542387 |
T |
|
| Q |
501 |
tttattaaacatgtaaacaccgttaccagtagttgtatttggattaattggatttttaaatatgtcgtaatcctttggaaatgtctctggtggtggattt |
600 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35542386 |
tttattaaacatgtaaacaccgttaccggtagttgtatttggattaactggatttttaaatatgtcgtaatcctttggaaatgtctctggtggtggattt |
35542287 |
T |
|
| Q |
601 |
ttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactac |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35542286 |
ttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactgc |
35542187 |
T |
|
| Q |
701 |
cgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagttcccatt |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35542186 |
cgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagttcccatt |
35542116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 60 - 771
Target Start/End: Complemental strand, 35528332 - 35527618
Alignment:
| Q |
60 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaactaatcttagtgtagagtatcatttaggaacatcttggctgtagcaccacaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
35528332 |
agaaagaaagaaaaacactcttaggaaattagggtttgacatgagtaactagtcttagtgtagggtatcgtttaggaacatcttggctgtagcaccacaa |
35528233 |
T |
|
| Q |
160 |
gtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35528232 |
gtaagagcttctgtaggtactttcctaattttatgaacaccttcagcaaaaataacacccattcccatatgcaaatgtggttcaatgtgacaatgaaatg |
35528133 |
T |
|
| Q |
260 |
cccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaattgaaact |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
35528132 |
cccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatataactgcagtgttcctcaaaggcgcacgtgttaaattcaaact |
35528033 |
T |
|
| Q |
360 |
ttccgcat---cacgtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactaccattccca |
456 |
Q |
| |
|
|| | || ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| | |
|
|
| T |
35528032 |
tttctgatgaacacctggttcaaatttcccttcaccatatcccaaaacccaaaaatcatgtccatgtaaatgccatggatgaacttcactagtattctct |
35527933 |
T |
|
| Q |
457 |
tgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttaccagtagttgtatttggattaattggatttt |
556 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||||| || ||||| ||||||||| ||| ||| |
|
|
| T |
35527932 |
ttcaacatgtttgcattttgtagtatcacatcaacaacctcattcaactgaaacgtgtaaacaccgttaccggttattgtacttggattaaccggagttt |
35527833 |
T |
|
| Q |
557 |
taaatatgtcgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttgg |
656 |
Q |
| |
|
||||||| ||| ||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35527832 |
taaatatatcgaaatccaatgggaatctctctggtggtggatttctatcaaatgtattgtttagtttatatttgattgctcctaagtacggtgttgttgg |
35527733 |
T |
|
| Q |
657 |
taatgttaatgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggc |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||||||| |||| ||||| || | |||||||||| |
|
|
| T |
35527732 |
caatgttaatgaaacattgttaatagcccatttaatgaaattacctattttgctttgtgtgttgaggaggtaaatcaagcggtctgcggtttttggtggc |
35527633 |
T |
|
| Q |
757 |
tgtggagttcccatt |
771 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
35527632 |
tgtggtgttcccatt |
35527618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 131 - 771
Target Start/End: Complemental strand, 35510064 - 35509421
Alignment:
| Q |
131 |
ttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatatg |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35510064 |
ttaggaacatctaggctgtagcaccacatttaagagcttctttaggtatgttcctaactttatgaacagcctcagcaaaaataacacccattcccatatg |
35509965 |
T |
|
| Q |
231 |
caaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
35509964 |
caaatgtggttcaatgtgacaatgaaatgcccaaacaccaggattatctgccttaaaccttagtgcagtccaaccatatggaaatataactgcagtgttc |
35509865 |
T |
|
| Q |
331 |
ctcaaaggtgcgcgtgtcaaattgaaactttccgcatca---cgtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaat |
427 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||| | |||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35509864 |
ctcaaaggtgcacgtgtcaaattgaaacttctctcatcaactcctggtctaaatctcccttcaccatatcccaaaacccaaaaatcatgtccatgcaaat |
35509765 |
T |
|
| Q |
428 |
gccatggatgaatttcactaccattcccatgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttacc |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | ||| |||||||||| || || |
|
|
| T |
35509764 |
gccatggatgaatttcactaccattcccatttaactggtttgcattttgtagtatcacatcaacaacctcattcaactggaacgtgtaaacaccattgcc |
35509665 |
T |
|
| Q |
528 |
agtagttgtatttggattaattggatttttaaatatgtcgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatat |
627 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||| || |
|
|
| T |
35509664 |
ggtagttgtgtttggattcactggatttttaaatatgtcataatccattggaaatctctctggtggtggatttttatcaaatgtattttttaggttaaat |
35509565 |
T |
|
| Q |
628 |
ttgattgctcctaagtaaggtgttgttggtaatgttaatgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagta |
727 |
Q |
| |
|
|| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
35509564 |
ttaattgatcctaagtaaggtgttgttggcaatgttaatgaaacattgttaatagcccatttagtgaaactaccgattttgttttgtgtattgaggaggt |
35509465 |
T |
|
| Q |
728 |
gaatcctgcggtgtgagaattttggtggctgtggagttcccatt |
771 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
35509464 |
gaatagtgcggtgtgaggattttggtggctgtggatttcccatt |
35509421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 130 - 332
Target Start/End: Complemental strand, 35954092 - 35953890
Alignment:
| Q |
130 |
tttaggaacatcttggctgtagcaccacaagtaagagcttctgtaggtactttcctaattttatgaacagcctcagcaaaaataacacccattcccatat |
229 |
Q |
| |
|
||||||||| |||| |||| ||| |||||| | |||| ||||| |||| ||||| |||||||| |||| | |||||||| |||||||||||| |||||| |
|
|
| T |
35954092 |
tttaggaacttcttcgctggagcgccacaatttagagtgtctgtcggtattttccaaattttataaacaccatcagcaaatataacacccatttccatat |
35953993 |
T |
|
| Q |
230 |
gcaaatgtggttcaatgtgacaatgaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgtt |
329 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
35953992 |
gcaaatgtggttcaacatgacaatgaaatgcccaaactccaggattatctgccttaaaccttaatgcagtccaaccatatggaaatgtaactgcagtgtt |
35953893 |
T |
|
| Q |
330 |
cct |
332 |
Q |
| |
|
||| |
|
|
| T |
35953892 |
cct |
35953890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 35953845 - 35953808
Alignment:
| Q |
374 |
gtttgaatttcccttctccatatcccaaaacccaaaaa |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35953845 |
gtttgaatttcctttctccatatcccaaaacccaaaaa |
35953808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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