View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_low_16 (Length: 333)
Name: NF5744_low_16
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 2380688 - 2380995
Alignment:
| Q |
4 |
atgtcgaagaatatagagtcacatgaatgtacgaaccataaaatatgtaacaaccaatgacatgcctccacataagtgggaacacattgccatctcaata |
103 |
Q |
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| T |
2380688 |
atgttgaataatttagagtcacatgaatggacgaaccataaaatatgtaacaaccaatgatatgcctccacataagtggcaacacattgccatctcaata |
2380787 |
T |
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| Q |
104 |
aaacatcatcattttgatcctttgaaggacatacgtgtcaagccacgactgcactgtcggttgtatatcgttagttgaagcatcttttcatctcatagaa |
203 |
Q |
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| T |
2380788 |
caacatcatcattttgatcctttgaaggacatacgtgtcaagccacgactgcactgtcggttgtatatagttagttgaagcatcttttcatctcatagaa |
2380887 |
T |
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| Q |
204 |
tagatacctc---ttttatgtcttcttttccttactaggtaacgacttttcgaatgtttttgttggtagtttgttcttgttttttcctctactattgtaa |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
2380888 |
tagatacctctttttttatgtcttcttttccttactaggtaacgacttttcgaatgtttatgttggtagtttgttcttgttttttccactactattgtaa |
2380987 |
T |
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| Q |
301 |
acttgtta |
308 |
Q |
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|||||||| |
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| T |
2380988 |
acttgtta |
2380995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 2359859 - 2359989
Alignment:
| Q |
4 |
atgtcgaagaatatagagtcacatgaatgtacgaaccataaaatatgtaacaaccaatgacatgcctccacataagtgggaacacattgccatctcaata |
103 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||| |||| | ||||||||||||| | || |
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| T |
2359859 |
atgttgaataatatagagtcacatgaatgtacgaaccattaaatgtgtaactaccaatgtcatgcctccac---cgtggaagcacattgccatctgagta |
2359955 |
T |
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| Q |
104 |
aaacatcatcattttgatcctttgaaggacatac |
137 |
Q |
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| T |
2359956 |
cgagttcatcattgtcgtcctttgaaggacatac |
2359989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 2360254 - 2360291
Alignment:
| Q |
138 |
gtgtcaagccacgactgcactgtcggttgtatatcgtt |
175 |
Q |
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| T |
2360254 |
gtgtcaagccacgactaaactgtcggttgtatatcgtt |
2360291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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