View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_low_2 (Length: 541)
Name: NF5744_low_2
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_2 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 56 - 541
Target Start/End: Original strand, 48911227 - 48911714
Alignment:
| Q |
56 |
gggcaaccagagttaggatc-tctccattgttggacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcacgttcattcta |
154 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
48911227 |
gggcaaccagagttaggatcctctccattgttggacattaaaagcaatagcagaaacagttaattgctacaatacctctctcatcatcacgttcattcta |
48911326 |
T |
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| Q |
155 |
attcatatatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttactt |
254 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
48911327 |
attcattcatagtatccaaacacacagaagacaaggcaaagatgatgaatacggaagaaggagaagagaaagcacttaccatctacttcataccttactt |
48911426 |
T |
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| Q |
255 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
354 |
Q |
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| T |
48911427 |
agcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatc |
48911526 |
T |
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| Q |
355 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcc-gcccgatggtgtcgaacccctcttca |
453 |
Q |
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| T |
48911527 |
cttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcgtcgaacccctcttca |
48911626 |
T |
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| Q |
454 |
ccaccaccgacctcgccaacctcacccaaatctatcgagcagccactctactcccaccaaccatcccacacttcgtcgaccagcaccc |
541 |
Q |
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| T |
48911627 |
ccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcaccc |
48911714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 48975193 - 48975036
Alignment:
| Q |
256 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatcc |
355 |
Q |
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|||||||||||||||| ||||||||||||||| || || |||||||||| | || |||| |||| |||||||| ||||| ||||| ||||| |||||| |
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| T |
48975193 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatca |
48975094 |
T |
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| Q |
356 |
ttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttc |
413 |
Q |
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| T |
48975093 |
ttctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttc |
48975036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 367
Target Start/End: Complemental strand, 48952342 - 48952213
Alignment:
| Q |
238 |
tacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacac |
337 |
Q |
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| T |
48952342 |
tacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactc |
48952243 |
T |
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| Q |
338 |
cctccaatgctcaaatccttggcaaatcta |
367 |
Q |
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| T |
48952242 |
attcaaatgctaaaatccttcccaaatcta |
48952213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 153; Significance: 8e-81; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 198 - 541
Target Start/End: Original strand, 5536 - 5880
Alignment:
| Q |
198 |
gatgaatacggaagaaggagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctc |
297 |
Q |
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|||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||| || ||||||||| |||| ||||||||||| ||| |
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| T |
5536 |
gatggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatgtgacatagcaacactc |
5635 |
T |
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| Q |
298 |
tttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcaca |
397 |
Q |
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| T |
5636 |
tttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaaccaacacctccgtattcaca |
5735 |
T |
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| Q |
398 |
ctgttccatttccttcacaagcagtaggccgccc-gatggtgtcgaacccctcttcaccaccaccgacctcgccaacctcacccaaatctatcgagcagc |
496 |
Q |
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| T |
5736 |
ccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctccgccgccaccgacctcgagaatcttcgcaagatctttcaagccac |
5835 |
T |
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| Q |
497 |
cactctactcccaccaaccatcccacacttcgtcgaccagcaccc |
541 |
Q |
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| T |
5836 |
cactctcctccaaccacccatccaacacttcgtggagcagcaccc |
5880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 215 - 427
Target Start/End: Original strand, 9553 - 9749
Alignment:
| Q |
215 |
gagaagagaaaccacttaatatatacttcataccttacttagcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtca |
314 |
Q |
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| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgcgacata----------------tacgctgtca |
9636 |
T |
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| Q |
315 |
aaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttca |
414 |
Q |
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| T |
9637 |
aaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttcc |
9736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 31742786 - 31742730
Alignment:
| Q |
88 |
gacattaaaagcaatagcagaaacaattaattagtacaatacctctctcatcatcac |
144 |
Q |
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|||| ||||||||||||| |||| |||||||| ||||||| ||||||||||||||| |
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| T |
31742786 |
gacactaaaagcaatagcggaaataattaattgctacaataactctctcatcatcac |
31742730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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