View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_low_24 (Length: 227)
Name: NF5744_low_24
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 27751306 - 27751113
Alignment:
| Q |
27 |
ccaacacaatgtatgtctaatagaagaagaatgaaagttacaagcattgaactcaaaagaagaaaatcaaggccatcccctagcgagccaaacactcgcc |
126 |
Q |
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| T |
27751306 |
ccaacacagtgtatgtctaatagaagaagaatgaaagttacaagcattgaactcaaaagaagaaaatcatggccatcccctagcgagccaaacactcgcc |
27751207 |
T |
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| Q |
127 |
caacaaagcaagtcacacaccaaaggcttaaaaggcgaattcgtccatcgaagcacatggtttgcatggcgaagaacatgaacagagatgatca |
220 |
Q |
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| T |
27751206 |
caacaaagcaagtcacacaccaaaggcataaaaggtgaattcgtccatcgaagcacatggtttgcatggcgaaaaacatgaacagagatgatca |
27751113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 31929981 - 31930081
Alignment:
| Q |
50 |
aagaagaatgaaagttacaagcattgaactcaaaagaagaaaatcaaggccatcccctagcgagccaaacactcgcccaacaaagcaagtcacacaccaa |
149 |
Q |
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|||||||||||||||| ||||||||||| |||||| |||||| |||| || ||||||| |||| || ||||||||||||||||||| | ||||| |
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| T |
31929981 |
aagaagaatgaaagttgtaagcattgaacctaaaagaggaaaattgtggccttcgaatagcgagtcaaatacccgcccaacaaagcaagtcagagaccaa |
31930080 |
T |
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| Q |
150 |
a |
150 |
Q |
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| T |
31930081 |
a |
31930081 |
T |
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