View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5744_low_3 (Length: 519)

Name: NF5744_low_3
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5744_low_3
NF5744_low_3
[»] chr4 (1 HSPs)
chr4 (17-508)||(6426901-6427385)
[»] chr1 (2 HSPs)
chr1 (217-297)||(37047110-37047192)
chr1 (216-302)||(32729657-32729745)
[»] chr3 (1 HSPs)
chr3 (228-297)||(34844496-34844565)
[»] chr5 (1 HSPs)
chr5 (216-297)||(31206361-31206444)
[»] chr2 (2 HSPs)
chr2 (220-297)||(7250342-7250420)
chr2 (236-276)||(18627895-18627935)
[»] scaffold0459 (1 HSPs)
scaffold0459 (262-302)||(10737-10777)
[»] scaffold0366 (1 HSPs)
scaffold0366 (262-302)||(12044-12084)
[»] chr7 (1 HSPs)
chr7 (236-276)||(38372997-38373037)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 6427385 - 6426901
Alignment:
Q  17 agttgtaatatgtggattatattgatttcaatttttggagtgaacactaattccataaaatattatcaatactaaaacttaaatccaatttagtgataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6427385 agttgtaatatgtggattatattgatttcaatttttggagtgaacaccaattccataaaatattatgaatactaaaacttaaatccaatttagtgataat 6427286  T
Q  117 aagctctctaaggaacaaaatctgttagaacacagaatataaccatgttagggcaaatccttatcatataaatttacgtatagnnnnnnnnnnnnnnnat 216  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||                |    
T  6427285 aagctctctaaggaacaaa-tctgttaaaacacagaatataaccatgttagggcaaatccttatcatataaatttacgtttagttttttttttttttt-t 6427188  T
Q  217 ttgaaaacttggtatcgggccaaggaccgactaatccaagggattcaatcccactgtccaattgtggggccccatttaaagtcagactctgtccgcttga 316  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||     
T  6427187 ttgaaaactcggtatccggccaaggaccgactaatccgagggattcaatcccactgtccacttgtggggccccatttaaagccagactctatccgcttgt 6427088  T
Q  317 tatgtataagctattttatttaatcccactgtccacttgctagatataagctatttttataaaaaagattaaatgaattcaaaatgttttcgtatgctat 416  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6427087 tatgtataagctattt-----aatcccactgtccacttgctagatataagctatttttataaaaaagattaaatgaattcaaaatgttttcgtatgctat 6426993  T
Q  417 ccctgagagcttgtgaaaataaggtgaaaacatcatatagatatgtcacatgctactttcataagctcttttaaacactcatacgtgttcat 508  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6426992 cccagagagcttgtgaaaataaggtgaaaacatcatatagatatgtcacatgcaactttcataagctcttttaaacactcatacgtgttcat 6426901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 37047192 - 37047110
Alignment:
Q  217 ttgaaaacttggtatcgggcc-aaggaccgactaatccaagggattcaatcccactgtccaattgt-ggggccccatttaaag 297  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||| | ||||||||| ||||| |||| ||||||||||||||||    
T  37047192 ttgaaaatttggtatcgggcccaagggccgactaatcctaggggtccaatcccaccgtccacttgtgggggccccatttaaag 37047110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 32729745 - 32729657
Alignment:
Q  216 tttgaaaacttggtatcggg-ccaaggaccgactaatccaagggattcaatcccactgtccaattgtgggg-ccccatttaaagtcaga 302  Q
    |||||||||| |||||| |  |||| ||||||||||||||||||  |||||||||| | ||| ||| |||| |||||||||||| ||||    
T  32729745 tttgaaaactcggtatccgatccaaagaccgactaatccaaggggatcaatcccaccgcccacttgcggggaccccatttaaagccaga 32729657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 34844565 - 34844496
Alignment:
Q  228 gtatcgggccaaggaccgactaatccaagggattcaatcccactgtccaattgtggggccccatttaaag 297  Q
    |||||||||||||||||||||||||| |||| | |||||||||  |||| ||| |||| |||||||||||    
T  34844565 gtatcgggccaaggaccgactaatccgaggggtccaatcccaccatccacttgcgggggcccatttaaag 34844496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 31206444 - 31206361
Alignment:
Q  216 tttgaaaacttggtatcgggcc-aaggaccgactaatccaagggattcaatcccactgtccaattgt-ggggccccatttaaag 297  Q
    |||||||||| |||||| |||| |||||||||||||||| |||  | ||||||||| ||||| |||| |||| |||||||||||    
T  31206444 tttgaaaactcggtatccggcccaaggaccgactaatccgaggagtccaatcccaccgtccacttgtgggggtcccatttaaag 31206361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 7250420 - 7250342
Alignment:
Q  220 aaaacttggtatcgggcc-aaggaccgactaatccaagggattcaatcccactgtccaattgtggggccccatttaaag 297  Q
    |||||| |||||| |||| |||||| ||||||||| |||| | ||||||||||||||| ||  |||| |||||||||||    
T  7250420 aaaactcggtatctggcccaaggacggactaatccgaggggtccaatcccactgtccactttagggggcccatttaaag 7250342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 18627935 - 18627895
Alignment:
Q  236 ccaaggaccgactaatccaagggattcaatcccactgtcca 276  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  18627935 ccaacgaccgactaatccaaggggtccaatcccactgtcca 18627895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 10737 - 10777
Alignment:
Q  262 caatcccactgtccaattgtggggccccatttaaagtcaga 302  Q
    ||||||||| ||||| |||||||||||||||||||| ||||    
T  10737 caatcccaccgtccacttgtggggccccatttaaagccaga 10777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 12044 - 12084
Alignment:
Q  262 caatcccactgtccaattgtggggccccatttaaagtcaga 302  Q
    ||||||||| ||||| |||||||||||||||||||| ||||    
T  12044 caatcccaccgtccacttgtggggccccatttaaagccaga 12084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 38372997 - 38373037
Alignment:
Q  236 ccaaggaccgactaatccaagggattcaatcccactgtcca 276  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  38372997 ccaaggaccgactaatccaaggggtccaatcccaccgtcca 38373037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University