View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5744_low_4 (Length: 506)
Name: NF5744_low_4
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 39509765 - 39510249
Alignment:
| Q |
17 |
atgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39509765 |
atgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgctgacataagaatg |
39509864 |
T |
|
| Q |
117 |
ctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||| |
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|
| T |
39509865 |
ctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagtggacttcacatcgcggtgaatg |
39509964 |
T |
|
| Q |
217 |
ataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttg |
316 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39509965 |
attccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttg |
39510064 |
T |
|
| Q |
317 |
cactgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtg |
416 |
Q |
| |
|
||| |||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39510065 |
caccttacaaactttctttaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtg |
39510164 |
T |
|
| Q |
417 |
ccgatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttcttttcact |
501 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39510165 |
tcgatgacgaatctttgacaaaaccattatctcagtctgaaattcaggtagtccttgacctgaccctggctcacttcttttcact |
39510249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 39542832 - 39543311
Alignment:
| Q |
19 |
gaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgct |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||| || ||||||| |||| ||||||||||||| | |
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|
| T |
39542832 |
gaataaacatcagatttttctgtaagctgttgtgctctaaagtaatcaggatcaagatacccaaaagtccctttaacacgtgtgctgacataagaatgtt |
39542931 |
T |
|
| Q |
119 |
gatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgat |
218 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||| || || |||||||| || |
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| T |
39542932 |
catcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcatcaagcaatatattagtggatttcacgtcacggtgaattat |
39543031 |
T |
|
| Q |
219 |
accaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgca |
318 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | |
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|
| T |
39543032 |
tccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttccaagtc---aaacaaggcaaatttgta |
39543128 |
T |
|
| Q |
319 |
ctgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgcc |
418 |
Q |
| |
|
|||| | | | || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
39543129 |
ttgtataaattctccctaagtgtaccattttccatgtactcataaacaagtatcatctcacacctttcatcacaataccctattaaggaaacaaggtgtt |
39543228 |
T |
|
| Q |
419 |
gatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttcttttcact |
501 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||| || ||| |||||||||||||| |
|
|
| T |
39543229 |
tgtgacgaatcttggacagaaccattatctcagtttgaaattcatgttgtccttgacctgaacccggcacacttcttttcact |
39543311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 501
Target Start/End: Original strand, 39574673 - 39575146
Alignment:
| Q |
25 |
acatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaa |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| || ||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
39574673 |
acatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaaagtccctttaacacatgtgctgacataagaatgttgatcaa |
39574772 |
T |
|
| Q |
125 |
gaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccacc |
224 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| ||||||| || ||||||||||| || |||||||| ||||| ||||| || || ||||| |
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|
| T |
39574773 |
gaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcgtcaagcaatatattagtggatttcacatcacggtggattattccacc |
39574872 |
T |
|
| Q |
225 |
agctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgcactgtac |
324 |
Q |
| |
|
||| | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | |||| |
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|
| T |
39574873 |
ggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttccaagtc---aaacaaggcaaatttgtatcgtac |
39574969 |
T |
|
| Q |
325 |
agactatctctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgac |
424 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
39574970 |
aaattatctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgac |
39575069 |
T |
|
| Q |
425 |
gaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttcttttcact |
501 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||||||||||||| |||||| | |||||||||||| |
|
|
| T |
39575070 |
gaatcttggacaaaaccattatctcagtttgaaattcatgacgtccttgacctgaacctggcacgcttcttttcact |
39575146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 39579200 - 39579682
Alignment:
| Q |
19 |
gaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgct |
118 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| ||||||||||||| |||||||| ||||| || ||||| || |||||||||||| | ||||||||||| | |
|
|
| T |
39579200 |
gaataaacatcggatttttctgtaaggtgtagtgatctaaagtaatcaggatcaagatacccaaaagtccctttaacacctgtgctcacataagaatgtt |
39579299 |
T |
|
| Q |
119 |
gatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgat |
218 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| ||||| || || |
|
|
| T |
39579300 |
gatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaacaagattctcatcaagcaatatattagtggatttcacatcacggtggattat |
39579399 |
T |
|
| Q |
219 |
accaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttccaagtcaagaaactaggcaaatttgca |
318 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
|
|
| T |
39579400 |
tccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttccaagtcaaaaaactaggcaaactttta |
39579499 |
T |
|
| Q |
319 |
ctgtacagactatctctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgcc |
418 |
Q |
| |
|
|||||| | | ||| |||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39579500 |
ttgtacaaattctctttaagtgtccctttttccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgta |
39579599 |
T |
|
| Q |
419 |
gatgacgaatctttgacaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttcttttcact |
501 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
39579600 |
tgtgacgaatcttggacaaaaccattatctcagcttcaaattcaggaagtccttgacctgaccccggcacccttcttttcact |
39579682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 334 - 501
Target Start/End: Original strand, 39520340 - 39520507
Alignment:
| Q |
334 |
ctaagtgtcccattttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgccgatgacgaatctttg |
433 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
|
| Q |
434 |
acaaaaccattatctcagtttgaaattcaggcagtccttgacctgaccctggctcacttcttttcact |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
39520440 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcacttcttttcact |
39520507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 35904669 - 35904726
Alignment:
| Q |
236 |
tgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttcca |
293 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 17349942 - 17349860
Alignment:
| Q |
135 |
tcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatga |
217 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||| ||| ||| || ||||| ||||| |||||||| | |||||||| |||| |
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|
| T |
17349942 |
tcttgaaagaccgaaatcagccaccttagcaacatgatcttcgtcgagcaaaatgttggtggatttaatgtcgcggtggatga |
17349860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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