View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5744_low_5 (Length: 493)
Name: NF5744_low_5
Description: NF5744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5744_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 8412738 - 8412962
Alignment:
| Q |
7 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8412738 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagtt |
8412837 |
T |
|
| Q |
107 |
ttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaatcggaactgaagtttgtaataaagtcatgatatatatgaa |
206 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
8412838 |
ttgggagatggattgaagcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatatgaa |
8412937 |
T |
|
| Q |
207 |
ttaatattatttgaagagtgtttat |
231 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
8412938 |
ttaatattatttgaagggtgtttat |
8412962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 8434836 - 8435060
Alignment:
| Q |
7 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8434836 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagtt |
8434935 |
T |
|
| Q |
107 |
ttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaatcggaactgaagtttgtaataaagtcatgatatatatgaa |
206 |
Q |
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| T |
8434936 |
ttgggagatggattgaagcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaagtttgtaataaagccatgatatatatgaa |
8435035 |
T |
|
| Q |
207 |
ttaatattatttgaagagtgtttat |
231 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
8435036 |
ttaatattatttgaagggtgtttat |
8435060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 284 - 474
Target Start/End: Original strand, 8412961 - 8413151
Alignment:
| Q |
284 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacaaaagagaaggggtcagaatgaaacaaaga |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8412961 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacgaaagagaaggggtcagaatgaaacaaaga |
8413060 |
T |
|
| Q |
384 |
aaccctgattgaccagtttaattgaaatagtctctgttcaaaattcccagccttgtccttagtttgggtcacactcaacatacgacatagt |
474 |
Q |
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| T |
8413061 |
aaccctgattgaccagtttaattgaaatagtctctgttcaaaattcccagccttgtccttagtttgggtcacactcaacatacgacatagt |
8413151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 284 - 474
Target Start/End: Original strand, 8435059 - 8435249
Alignment:
| Q |
284 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacaaaagagaaggggtcagaatgaaacaaaga |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8435059 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacgaaagagaaggggtcagaatgaaacaaaga |
8435158 |
T |
|
| Q |
384 |
aaccctgattgaccagtttaattgaaatagtctctgttcaaaattcccagccttgtccttagtttgggtcacactcaacatacgacatagt |
474 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8435159 |
aaccctgattgaccagtttaattgaaatagtctctgttcaaaattcccagccttgtccttagtttgggtcacactcaacatacgacatagt |
8435249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 8394711 - 8394515
Alignment:
| Q |
7 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8394711 |
tctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagtt |
8394612 |
T |
|
| Q |
107 |
ttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaatcggaactgaagtttgtaataaagtcatgatatatat |
203 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||| ||||||||||||||| | ||| |||||||||||| |
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| T |
8394611 |
ttgggagatggattgaagcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaagtttgtattgaagacatgatatatat |
8394515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 8431775 - 8431956
Alignment:
| Q |
42 |
ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctcttt |
141 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| ||| ||||| |||| |||| ||||||||||||||||||| |
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| T |
8431775 |
ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt |
8431874 |
T |
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| Q |
142 |
gaagatgatgataaagaacaagaaatcggaactgaagtttgtaata---aagtcatgatatatatgaattaatattatttgaaga |
223 |
Q |
| |
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||| |||||||||||||||||| | |||||||||||||||||| ||| ||||||||||| |||||||| |||||||||| |
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| T |
8431875 |
gaa---gatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaaga |
8431956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 8406694 - 8406874
Alignment:
| Q |
42 |
ttttagttcttgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctcttt |
141 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| || ||| |||||||||||||| ||| ||||| |||| |||| ||| ||||||||||||||| |
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| T |
8406694 |
ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgttaattactctcttt |
8406793 |
T |
|
| Q |
142 |
gaagatgatgataaagaacaagaaatcggaactgaagtttgtaata---aagtcatgatatatatgaattaatattatttgaag |
222 |
Q |
| |
|
||| |||||||||||||||||| | |||||||||||||||||| ||| ||||||||||| |||||||| ||||||||| |
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|
| T |
8406794 |
gaa---gatgataaagaacaagaagttagaactgaagtttgtaatattgaagccatgatatatacaaattaataatatttgaag |
8406874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 474
Target Start/End: Complemental strand, 8378334 - 8378279
Alignment:
| Q |
420 |
ttcaaaattcccagccttgtcc-ttagtttgggtcacactcaacatacgacatagt |
474 |
Q |
| |
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|||||||||| ||||||| ||| |||||||||||| || ||||||||||||||||| |
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|
| T |
8378334 |
ttcaaaattcgcagccttatcccttagtttgggtctcattcaacatacgacatagt |
8378279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 8394418 - 8394374
Alignment:
| Q |
300 |
ttgaatgttaatatgtgtaaggtggtatgaatatttatatatata |
344 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| |||| |
|
|
| T |
8394418 |
ttgaatgttagtatgtgtaaggtggtatcaatacttatatgtata |
8394374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 8432141 - 8432177
Alignment:
| Q |
403 |
aattgaaatagtctctgttcaaaattcccagccttgt |
439 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
8432141 |
aattgacatagtctctgttcaaaattccaagccttgt |
8432177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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