View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745-Insertion-3 (Length: 260)
Name: NF5745-Insertion-3
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 2686066 - 2686318
Alignment:
| Q |
8 |
catggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttagaactaaatttccatta |
107 |
Q |
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| T |
2686066 |
catggatggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttagaactaaatttccatta |
2686165 |
T |
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| Q |
108 |
tcgaaaagctgaagaacaagtgggttggtagcttttgtttgattcgaagaccatatgaggttgttgtctgaatctgatgatgaattgagaagtactatgt |
207 |
Q |
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| T |
2686166 |
tcgaaaagctgaagaacaagtgggttggtagcttttgtttgattggaagaccatatgaggttgttgtctgaatctgatgatgaattgagaagtactatgt |
2686265 |
T |
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| Q |
208 |
ttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttg |
260 |
Q |
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| T |
2686266 |
ttccattgtcaccgattttgaggtgactattggttgaattttgaagagggttg |
2686318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 2669967 - 2669927
Alignment:
| Q |
14 |
tggtaacaaagtatctgttggataatcaaagctttgccata |
54 |
Q |
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| T |
2669967 |
tggtaacaaagtatctgttggatgatcaaaactctgccata |
2669927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 36361000 - 36360942
Alignment:
| Q |
15 |
ggtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcatt |
73 |
Q |
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| T |
36361000 |
ggtaacaaagtatctgtagggtaatcaaaactttgccatagaaaatttgttggatcatt |
36360942 |
T |
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