View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5745-Insertion-4 (Length: 254)
Name: NF5745-Insertion-4
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745-Insertion-4 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 53431035 - 53430790
Alignment:
| Q |
9 |
cctattttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggg |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53431035 |
cctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggt |
53430936 |
T |
|
| Q |
109 |
gaaataacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaacca |
208 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| | |
|
|
| T |
53430935 |
gaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaa |
53430836 |
T |
|
| Q |
209 |
cgatcaaggttatctcagaaaccgtccctgatagtttcagctgccc |
254 |
Q |
| |
|
| || |||||||| ||| |||| |||||||||| ||||| |||||| |
|
|
| T |
53430835 |
ctattaaggttatttcaaaaactgtccctgataatttcaactgccc |
53430790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 53423068 - 53422827
Alignment:
| Q |
14 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
113 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
114 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaa-ccacgat |
212 |
Q |
| |
|
||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||| |||| || |
|
|
| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
213 |
caaggttatctcagaaaccgtccctgatagtttcagctgccc |
254 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgccc |
53422827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 26095415 - 26095177
Alignment:
| Q |
16 |
tttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaataa |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
116 |
caccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatcaa |
215 |
Q |
| |
|
|| |||| ||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| || |||||||| || || |
|
|
| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaa |
26095216 |
T |
|
| Q |
216 |
ggttatctcagaaaccgtccctgatagtttcagctgccc |
254 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||| |||||| |
|
|
| T |
26095215 |
ggttatttcaaaaactgtccctgatagtttcaactgccc |
26095177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 48374785 - 48375026
Alignment:
| Q |
13 |
ttttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaa |
112 |
Q |
| |
|
||||||| | |||||||||| ||| |||| ||| |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
113 |
taacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgat |
212 |
Q |
| |
|
||||| ||| ||||||||||||||||| || ||||||||||| |||| ||||||||||||||| | |||||||||||| |||||||| |||||||| || |
|
|
| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactat |
48374984 |
T |
|
| Q |
213 |
caaggttatctcagaaaccgtccctgatagtttcagctgccc |
254 |
Q |
| |
|
|||||||| ||| |||| |||||||||| ||||| |||||| |
|
|
| T |
48374985 |
taaggttatttcaaaaactgtccctgatactttcaactgccc |
48375026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 53307870 - 53307630
Alignment:
| Q |
14 |
tttttctaaatgcagcaactcaagttaacaatttgaagggtcccattacaacagagttagggtcgattgccacaccttatgactatggagcaggggaaat |
113 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||||| ||||||||| || | || ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
114 |
aacaccaaccgaatcattccaaccagggctagtttatgaaaccagcatcattgactacttgaacttcttgtgttacatgggatacaatacaaccacgatc |
213 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||||||||||| |||| |||||||||| | |||| |||||||||||| |||| |||||||||||| | |
|
|
| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtg |
53307671 |
T |
|
| Q |
214 |
aaggttatctcagaaaccgtccctgatagtttcagctgccc |
254 |
Q |
| |
|
||| ||||||| |||||| |||||||||||||| |||||| |
|
|
| T |
53307670 |
aagattatctctaaaaccgcccctgatagtttcaactgccc |
53307630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University