View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745-Insertion-6 (Length: 173)
Name: NF5745-Insertion-6
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 6e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 48416822 - 48416657
Alignment:
| Q |
8 |
taaatttgatgcacactcttatgaggttgggatgttagcaggagctagccggggccaagtctatgtttggacattgagctaagatttttattctataata |
107 |
Q |
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| T |
48416822 |
taaatttgatgcacactcttatgaggttgggatgttagcaggagctagctggggccaagtctatgtttggacattgagctaagatttttattctataata |
48416723 |
T |
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| Q |
108 |
tgcagcacaaattttggagtccccatgttgttttggatgtggtattgcagcacacattctcgagtc |
173 |
Q |
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| T |
48416722 |
tgcagcacaaattttggagtccccgtgttgttttggatgtgatattgcagcacacattctcgagtc |
48416657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 48422074 - 48421908
Alignment:
| Q |
8 |
taaatttgatgcacactcttatgaggttgggatgttagcaggagctag---ccggggccaagtctatgtttggacattgagctaagatttttattctata |
104 |
Q |
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| T |
48422074 |
taaatttgatgcacactcttatgaggttgggatgttagcaggaggtagtagcggaggccaggtctatgtttggacattgagctaagatttttattctata |
48421975 |
T |
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| Q |
105 |
atatgcagcacaaatt-ttggagtccccatgttgttttggatgtggtattgcagcacacattctcga |
170 |
Q |
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| T |
48421974 |
atatgcaacacaaattctctgagtccccgtactgttttggatgtggtattgcagcacaaattctcga |
48421908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 48410494 - 48410398
Alignment:
| Q |
11 |
atttgatgcacactcttatgaggttgggatgttagcaggagct---agccggggccaagtctatgtttggacattgagctaagatttttattctata |
104 |
Q |
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| T |
48410494 |
atttgatgcaaactcttgtgaggttgggatgctagcaggagctacaagtggaggccaggtctatatctggacatcaagctaagaattttattctata |
48410398 |
T |
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