View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_16 (Length: 313)
Name: NF5745_high_16
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 297
Target Start/End: Complemental strand, 42422459 - 42422166
Alignment:
| Q |
4 |
atgaagagtacttagcaatattatcatgcttaatctatgtttaaattgtggtagaacacaaagcacccagttttgaatttagaggaggcacattcaaagt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422459 |
atgaagagtacttagcaatattatcatgcttaatctatgtttaaattgtggtagaacacaaagcacccagttttgaatttagaggaggcacattcaaagt |
42422360 |
T |
|
| Q |
104 |
gggtccaattccaaaagccacgatagaatcacaattaacattaaacctgtaacgaccagaaacccaagtaccaattttccaacgaagttttccattagct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422359 |
gggtccaattccaaaagccacgatagaatcacaattaacattaaacctgtaacgaccagaaacccaagtaccaattttccaacgaagttttccattagct |
42422260 |
T |
|
| Q |
204 |
ttaagactcaaacccaatcttccagaaacttgatcacgactcaattcataactaatggaaggagcaacaggtaaaccatttccaatcaaagaag |
297 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42422259 |
ttaagactcaagcccaatcttccagaaacttgatcacgactcaattcataaccaatggaaggagcaacaggtaaaccatttccaatcaaagaag |
42422166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 2237209 - 2237486
Alignment:
| Q |
4 |
atgaagagtacttagcaatattatcatgcttaatctatgtttaaattgtggtagaacacaaagcacccagttttgaatttagaggaggcacattcaaagt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |
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| T |
2237209 |
atgaagagtacttagcaatattatcatgcttaatctatgtttaaattgtggtagaacacaaagcaccctgttttgaattcagaggaggcacattcagagt |
2237308 |
T |
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| Q |
104 |
gggtccaattccaaaagccacgatagaatcacaattaacattaaacctgtaacgaccagaaacccaagtaccaattttccaacgaagttttccattagct |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
2237309 |
gggtccaattccaaaagccactatagaatcacaattaacattaaacatgtaacgatcagaaa-tcaagtaccaatttttcaacgaagttttccattggct |
2237407 |
T |
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| Q |
204 |
ttaagactcaaacccaatcttccagaaacttgatcacgactcaattcataactaatggaaggagcaacaggtaaaccat |
282 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
2237408 |
ttaagactcaaacacaatcttccagatacttgatcacgactcaattcacaacaaatggaaggaacaacaggtaaaccat |
2237486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 282
Target Start/End: Original strand, 34807064 - 34807340
Alignment:
| Q |
5 |
tgaagagtacttagcaatattatcatgcttaatctatgtttaaattgtggtagaacacaaagcacccagttttgaatttagaggaggcacattcaaagtg |
104 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
34807064 |
tgaagagtacttagcaatattaccatgcttaatctatgtttaaattgtgttagaacacaaagcaccttgttttgaattcagaggaggcacattcaaagtg |
34807163 |
T |
|
| Q |
105 |
ggtccaattccaaaagccacgatagaatcacaattaacattaaacctgtaacgaccagaaacccaagtaccaattttccaacgaagttttccattagctt |
204 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
34807164 |
ggtccaattccaaaagccactatagaatcacaattaacattaaacctgtaacaatcagaaa-tcaagtaccaatttttcaacgaagttttccattagctt |
34807262 |
T |
|
| Q |
205 |
taagactcaaacccaatcttccagaaacttgatcacgactcaattcataactaatggaaggagcaacaggtaaaccat |
282 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
34807263 |
taagactcaaacacaatcttccagatacttgatcatgactcaattcacaacaaatggaaggaacaacaggtaaaccat |
34807340 |
T |
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