View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_18 (Length: 275)
Name: NF5745_high_18
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 51361955 - 51361784
Alignment:
| Q |
1 |
agtacatatttgttacgcattacacaattaacatatatagccaccaatacagtcatcctttcaggaaagttattcccttcaaccctcagccatggtaact |
100 |
Q |
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| T |
51361955 |
agtacatatttgttacgcattacacaattaacatatatagccaccaatacagtcatcctttcaggaaagttattcccttccaccctcagccatggtaact |
51361856 |
T |
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| Q |
101 |
atctgctcatctcgtgcaccataatatagagagtgttcatgttaacatgtttaatgtgttttcccctacttaaa |
174 |
Q |
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| T |
51361855 |
atctgctcatctcgtgcaccataatat--agagtgttcatgttaacatgtttaatatgttttcccctacttaaa |
51361784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 51361735 - 51361633
Alignment:
| Q |
172 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttcttagaattttgatttcttctcact |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
51361735 |
aaacattgttcaaaaaatattctgcatgaccattattttagctatctatacaaacaccttggttggttgtgttttctttgaattttgatttcttttaact |
51361636 |
T |
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| Q |
272 |
cga |
274 |
Q |
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||| |
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| T |
51361635 |
cga |
51361633 |
T |
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