View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_2 (Length: 859)
Name: NF5745_high_2
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 336 - 843
Target Start/End: Complemental strand, 29040505 - 29040000
Alignment:
| Q |
336 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
434 |
Q |
| |
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||||| |||||| ||| || ||||||||| | | |||||||||||||| ||||| || ||||| | || |||||||||| |||||||| || || || |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
|
| Q |
435 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacatgttttgcttgttg |
533 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgcttgttg |
29040306 |
T |
|
| Q |
534 |
atgggccagtaatgcttataaggtactaggcttcttgtaaagaaatcataatatcttggctttatgaacaatgtcattgaatcacatgctattatatatt |
633 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29040305 |
atgggccagtagtgcttataaggtactaggcttcttgtaaagaaatcataatatcttggctttatgaacaatgtcattgaatcacatgctattatatatt |
29040206 |
T |
|
| Q |
634 |
tttcactcacagaccatgaaatcccttccacataaatcttgtaccttcacataaaaaagtaacacaaggaatgtagcaatttattgagtgacaaatctaa |
733 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29040205 |
tttcactcacagaccatgaaatcccttccacataaatcttgtaccttcacataaaagagtaacacaaggaatgtagcaatttattgagtgacaaatctaa |
29040106 |
T |
|
| Q |
734 |
aagaatatattggattttgatttggtgtagtaactccatctgcaattttcgatttcaatcattcattttgattaacgatcaagataattcttaactgatt |
833 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29040105 |
aagaatatattggattttgat----tgtagtaactccatccgcaattatcgatttcaatcattcattttgattaacgatcaagataattcttaactgatt |
29040010 |
T |
|
| Q |
834 |
ttgttattat |
843 |
Q |
| |
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|||||||||| |
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|
| T |
29040009 |
ttgttattat |
29040000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 316 - 770
Target Start/End: Complemental strand, 29019164 - 29018715
Alignment:
| Q |
316 |
caaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatatattgac |
415 |
Q |
| |
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||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
29019164 |
caaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgtattgac |
29019065 |
T |
|
| Q |
416 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttga |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29019064 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatatcttga |
29018965 |
T |
|
| Q |
516 |
cacatgttttgcttgttgatgggccagtaatgcttataaggtactaggcttcttgtaaagaaatcataatatcttggctttatgaacaatgtcattgaat |
615 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29018964 |
cacatgttttgcttgttgatgggccagtagtgcttataaggtactaggcttcttgtaaagaaatcataatatcttggctttatgaacaatgtcattgagt |
29018865 |
T |
|
| Q |
616 |
cacatgctattatatatttttcactcacagaccatgaaatcccttccacataaatcttgtaccttcacataaaaaagtaacacaaggaatgtagcaattt |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||||||| |
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| T |
29018864 |
cacatgctattatatatttttcactcacagaccatgatctcccttccacgtaaatcttgtaccttcata-aaaaaagcaacacaagaaatgtagcaattt |
29018766 |
T |
|
| Q |
716 |
attgagtgacaaatctaaaagaatatattggattttgatttggtgtagtaactcc |
770 |
Q |
| |
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| | ||||||||| ||||| | ||||||||||||||||||| |||||||||| |
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|
| T |
29018765 |
actaagtgacaaacctaaagg----tattggattttgatttggtttagtaactcc |
29018715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 29041452 - 29041160
Alignment:
| Q |
8 |
gacatcatcataaataaaataaggagaaaacgttgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatatacca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041452 |
gacatcatcataaataaaataaggagaaaacattgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatatacca |
29041353 |
T |
|
| Q |
108 |
tccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041352 |
tccattgaacatgccacattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgta |
29041253 |
T |
|
| Q |
208 |
acatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29041252 |
acatataatcatacaccaatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
29041160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 29019743 - 29019471
Alignment:
| Q |
24 |
aaataaggagaaaacgttgcacatggaggtgtgtcacttggtgacttaaccatggactcaaccataaattccctccatataccatccattgaacatgcca |
123 |
Q |
| |
|
||||||||||||||| | | ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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|
| T |
29019743 |
aaataaggagaaaacatagtacatggaagtgtatcacttggtgacttaaccatggactcaaccataaactccctccatataccacccattggacatgcca |
29019644 |
T |
|
| Q |
124 |
cattttcagtacaaacctcaatagcttctgcaggtatttttggttcaaatcttatgagatttgcatattcagtcaatagatgtaacatataatcatacac |
223 |
Q |
| |
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||||||| ||||||||||| ||| |||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29019643 |
agttttcagaacaaacctcaactgctcctgcaggtatggttgcttcaaatctcatgagctttgcatattcagtcaatagatgtaacatataatcatacac |
29019544 |
T |
|
| Q |
224 |
caatttcatatttacgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatg |
296 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
29019543 |
caatttcatatttacgttctcttctatgaatcttgtcccttctctgccaatctcttctgcctgttgaattatg |
29019471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
321 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
402 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||||||||| ||| | ||| | |||||||||||||| | |||||||| |
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|
| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 563 - 689
Target Start/End: Original strand, 11715252 - 11715378
Alignment:
| Q |
563 |
gcttcttgtaaagaaatcataatatcttggctttatgaacaatgtcattgaatcacatgctattatatatttttcactcacagaccatgaaatcccttcc |
662 |
Q |
| |
|
||||||||||||||||||||| || | |||| |||||||| ||||| || |||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
11715252 |
gcttcttgtaaagaaatcatagtacttaggctctatgaacatagtcatggagtcacatgctattatgtacttttcactcacagaccatgttgccccttct |
11715351 |
T |
|
| Q |
663 |
acataaatcttgtaccttcacataaaa |
689 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
11715352 |
gcataaatcttgtaccttaacataaaa |
11715378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
353 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
400 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
321 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
391 |
Q |
| |
|
||||||||||||| |||||| |||||||| | ||||||||||||| ||| | |||| ||||| ||| |||| |
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|
| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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