View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_23 (Length: 233)
Name: NF5745_high_23
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 29040194 - 29040000
Alignment:
| Q |
19 |
gaccatgaaatcccttccacataaatcttgtaccttcacataaaaaagtaacacaaggaatgtagcaatttattgagtgacaaatctaaaagaatatatt |
118 |
Q |
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| T |
29040194 |
gaccatgaaatcccttccacataaatcttgtaccttcacataaaagagtaacacaaggaatgtagcaatttattgagtgacaaatctaaaagaatatatt |
29040095 |
T |
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| Q |
119 |
ggattttgatttggtgtagtaactccatctgcaattttcgatttcaatcattcattttgattaacgatcaagataattcttaactgattttgttattat |
217 |
Q |
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| T |
29040094 |
ggattttgat----tgtagtaactccatccgcaattatcgatttcaatcattcattttgattaacgatcaagataattcttaactgattttgttattat |
29040000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 29018835 - 29018715
Alignment:
| Q |
19 |
gaccatgaaatcccttccacataaatcttgtaccttcacataaaaaagtaacacaaggaatgtagcaatttattgagtgacaaatctaaaagaatatatt |
118 |
Q |
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|||||||| |||||||||| ||||||||||||||||| | ||||||| |||||||| |||||||||||||| | ||||||||| ||||| | |||| |
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| T |
29018835 |
gaccatgatctcccttccacgtaaatcttgtaccttcata-aaaaaagcaacacaagaaatgtagcaatttactaagtgacaaacctaaagg----tatt |
29018741 |
T |
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| Q |
119 |
ggattttgatttggtgtagtaactcc |
144 |
Q |
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| T |
29018740 |
ggattttgatttggtttagtaactcc |
29018715 |
T |
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