View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_3 (Length: 665)
Name: NF5745_high_3
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 105 - 648
Target Start/End: Original strand, 13721575 - 13722118
Alignment:
| Q |
105 |
tatttgcgtaatctattttttataagccgaagaataaaggttaaaaacatactttttatacgttgctgaattgaatccattgttgagaaagtgcatactt |
204 |
Q |
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| T |
13721575 |
tatttgcgtaatctatttttcataggccgaagaataaaggttaaaaacatactttttatacgttg-----ttgaagccattgttgagaaagtgcatactt |
13721669 |
T |
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| Q |
205 |
cactcagtcctctcagtattgtacaatttatgcagtgaagtagttcaaaaatgataatcattgaatcgttgtgaagctagtaatttcacacggcttattt |
304 |
Q |
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| T |
13721670 |
cactcagtcctctcagtattgtacaatttatgcagtgaagtagttcaaaaatgataatcattgaatcgttgtgaagctagtaatttcacagggcttattt |
13721769 |
T |
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| Q |
305 |
attttaatctatagaagacaaaagtgaattataagtattaccatagaaattgcaaatagatatgaccccagttccatttaccaatcatgacatgccatac |
404 |
Q |
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| T |
13721770 |
attttaatctatagaagacaaaagtgaattataagtattaccatagaaattgcaaatagatatgaccccagttccatttaccaatcatgacatgccatac |
13721869 |
T |
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| Q |
405 |
acaaaagtccaaacctggccgtttccttcagactcttctttttcaattcatgataa-----aaacatttatattataataatataaagtttcaaaccaaa |
499 |
Q |
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| T |
13721870 |
acaaaagtccaaacctggccgtttccttcagactcttctttttcaattcatgataatggagtaacatttatattataataatttaaagtttcaaaccaaa |
13721969 |
T |
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| Q |
500 |
cacttat-aaaaaattcacaaatgaaagccttgaaatttgatgataacataccaacattctttgtttccttttataaggttattttcacactagacctct |
598 |
Q |
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| T |
13721970 |
cacttataaaaaaattcacaaatgaaagccttgaaa-ttgatgataacatacgaacattctttgtttccttttataaggttattttcacactagacctct |
13722068 |
T |
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| Q |
599 |
tccaacacaatctagacaatggatgcaacacaattagagaaaatctatgt |
648 |
Q |
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| T |
13722069 |
tccaacacaatctagacaatggatgcaacacaattagagaaaatctatgt |
13722118 |
T |
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