View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_high_4 (Length: 597)
Name: NF5745_high_4
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_high_4 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 35 - 589
Target Start/End: Complemental strand, 54619120 - 54618562
Alignment:
| Q |
35 |
aggggaggtaagctattgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
134 |
Q |
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| T |
54619120 |
aggggaggtaagctattgcagtgaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattggttgttgtaggaggcgactgg |
54619021 |
T |
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| Q |
135 |
ggtgcgagggctatcgctttcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
234 |
Q |
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| T |
54619020 |
ggtgcgaggg---tcgctgtcacggttcagcatgaaaattgttggaatatagatcataagtatagctactatgtagtcacgaatgtaggcacacttggcc |
54618924 |
T |
|
| Q |
235 |
ggtttgcgtaaacaaaaattgtgttcattgtattgcgatttatgattcttttattcnnnnnnnnn-------actaatgattcttttatcattttgttac |
327 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54618923 |
ggtttgcgtaaacaaagattgtgttcattgtattgcgatttatgattcttttattcttttttctttttttttactaatgattcttttatcattttgttac |
54618824 |
T |
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| Q |
328 |
tagttgttcttacaggttataannnnnnngtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagacccatttaagaa |
427 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
54618823 |
tagttgttcttacagattataatttttttgtaaaccaaggtatcatctgaacgtaattgtgaagattaattcttcgagataattgagatccatttaagga |
54618724 |
T |
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| Q |
428 |
tataatttatgttttttatacgcatcggtcgggaatcgaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgt |
527 |
Q |
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| T |
54618723 |
tataatttatgttttttatacgcatcggtcgggaatcaaaccttaaactaaattattaagggactgaaacatctaccacttatgtccaccatatgtttgt |
54618624 |
T |
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| Q |
528 |
taatcgattataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtg |
589 |
Q |
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| T |
54618623 |
taatcgattataacttactagttaagctacacaaagattgtgttaataaatatcgatctgtg |
54618562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 13951061 - 13951107
Alignment:
| Q |
59 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
105 |
Q |
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| T |
13951061 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
13951107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 54619548 - 54619520
Alignment:
| Q |
14 |
cacaaaagaggggcaaggggcaggggagg |
42 |
Q |
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| T |
54619548 |
cacaaaagaggggcaaggggcaggggagg |
54619520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 3201 - 3247
Alignment:
| Q |
59 |
agctccctccgcccctgcccttgtgtttggccaaaacgtgtgttagg |
105 |
Q |
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| T |
3201 |
agctccctccgcccctacccttgcgtttgacccaaacgtgtgttagg |
3247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 6938287 - 6938345
Alignment:
| Q |
55 |
gtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaattg |
113 |
Q |
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| T |
6938287 |
gtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
6938345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 39129296 - 39129349
Alignment:
| Q |
57 |
gaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgttaggtccaa |
110 |
Q |
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| T |
39129296 |
gaagctccctccacccatgcccttgtgtttgggtcaaacgtgtgttaggcccaa |
39129349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 2697802 - 2697854
Alignment:
| Q |
51 |
tgtagtgaagctccctccgcccctgcccttgtgtttggccaaaacgtgtgtta |
103 |
Q |
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| T |
2697802 |
tgtagtgaagctccctccgtccctgaccttgcatttggcccaaacatgtgtta |
2697854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 29663225 - 29663197
Alignment:
| Q |
53 |
tagtgaagctccctccgcccctgcccttg |
81 |
Q |
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| T |
29663225 |
tagtgaagctccctccgcccctgcccttg |
29663197 |
T |
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