View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5745_high_8 (Length: 448)

Name: NF5745_high_8
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5745_high_8
NF5745_high_8
[»] chr5 (3 HSPs)
chr5 (18-436)||(34646200-34646615)
chr5 (18-436)||(34665894-34666309)
chr5 (42-420)||(19648952-19649321)
[»] chr4 (2 HSPs)
chr4 (18-436)||(45645396-45645811)
chr4 (235-269)||(1390499-1390533)
[»] chr8 (8 HSPs)
chr8 (18-424)||(40717904-40718304)
chr8 (212-412)||(14183338-14183535)
chr8 (18-104)||(14183147-14183233)
chr8 (219-331)||(14192295-14192404)
chr8 (225-274)||(14201301-14201350)
chr8 (57-97)||(14192124-14192164)
chr8 (363-419)||(14192436-14192492)
chr8 (57-97)||(14201142-14201182)
[»] chr6 (2 HSPs)
chr6 (214-433)||(34303063-34303279)
chr6 (19-102)||(34302859-34302942)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 34646200 - 34646615
Alignment:
Q  18 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646200 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 34646299  T
Q  118 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacccagtttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||       ||||| |||||    
T  34646300 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgtttt 34646396  T
Q  218 ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646397 ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat 34646496  T
Q  318 tcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34646497 tcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc 34646596  T
Q  418 aacaattcagcctatgcta 436  Q
    |||||||||||||||||||    
T  34646597 aacaattcagcctatgcta 34646615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 34665894 - 34666309
Alignment:
Q  18 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34665894 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 34665993  T
Q  118 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacccagtttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||       ||||| |||||    
T  34665994 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacg---gtgttgtgtcaactcctctaataaaaaaagaccccgtttt 34666090  T
Q  218 ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666091 ctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgat 34666190  T
Q  318 tcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34666191 tcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatc 34666290  T
Q  418 aacaattcagcctatgcta 436  Q
    |||||||||||||||||||    
T  34666291 aacaattcagcctatgcta 34666309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 420
Target Start/End: Complemental strand, 19649321 - 19648952
Alignment:
Q  42 gtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaaggagtcaaacgcatcaagtatactca 141  Q
    |||||||| | ||||||||||  ||| ||||||||||||||||| ||||| |||||| |||||||||||      || || |||    | || | |||||    
T  19649321 gtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttgttgccattgttggtt---gactcgaacaagacgagcaaactca 19649225  T
Q  142 gttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agttttctactttttgacattacaagc 238  Q
     |||||||||||||||||||||||| |||||||   ||||||||||||||||| |  |       |||||   || |||||||| |||||| ||| ||||    
T  19649224 attttggagatgccgctgtggtttctggtgacg---gtgttgtgtcaactccttttgtgaaaaaagaccctcaagctttctactatttgacgttagaagc 19649128  T
Q  239 atttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgattcaggtacaacattgacactt 338  Q
    |||||||||||||||||||||| ||||||||| ||  | ||    || ||    ||| || |||||||||||| ||||||| |||||||||||||| |||    
T  19649127 atttagtgttggaaacaaaagaatagaatttgaag--tgtt----agatgacagtgaggagggtaacatcatacttgattctggtacaacattgactctt 19649034  T
Q  339 ataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaac 420  Q
     |||| ||  | || |||||||| |||||||| || || |   |  ||||||||||||||||||||||||||||||||||||    
T  19649033 ttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatgatcctaatcaac 19648952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 45645396 - 45645811
Alignment:
Q  18 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 117  Q
    ||||| ||||||||||| || || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||    
T  45645396 atagtgggccttggaggtggaccagtgtctctaataacacaattgggatcatcaattggtggtgaattctcttattgtttggtgccattggataacaagg 45645495  T
Q  118 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngacc---cagt 214  Q
    |||||||| || | |||| ||||||||||||||||||||||||||||||||||||| |   |||||||||||||||| ||||       ||||   ||||    
T  45645496 agtcaaacacaacgagtaaactcagttttggagatgccgctgtggtttcgggtgacaa---tgttgtgtcaactcctataataaaaaaagacccttcagt 45645592  T
Q  215 tttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataatt 314  Q
    || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | |||   ||||||||||||||| ||||||    
T  45645593 ttactacgttttgacattagaagcatttagtgttggaaacaaaagagtagaatttggagggtcttcagaggatgg---tgatgaaggtaacattataatt 45645689  T
Q  315 gattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatccta 414  Q
    |||||||||||||||||||   || ||||| | ||||| ||||  || ||||||||||||||||| ||||||||||||||| | ||||| |||||||||     
T  45645690 gattcaggtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtggatgatcctt 45645789  T
Q  415 atcaacaattcagcctatgcta 436  Q
    || ||| |||| ||||||||||    
T  45645790 ataaactattcggcctatgcta 45645811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 1390499 - 1390533
Alignment:
Q  235 aagcatttagtgttggaaacaaaagagtagaattt 269  Q
    |||||||||||||||||||||||||||||||||||    
T  1390499 aagcatttagtgttggaaacaaaagagtagaattt 1390533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 40717904 - 40718304
Alignment:
Q  18 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgccattgttgaacaagg 117  Q
    ||||||||||||||||| || || |||||||| ||||||||| | ||||| |||||||||   |||||||||||||||||| | |||||||        |    
T  40717904 atagttggccttggaggtggtcccgtgtctcttataacacaacttggatcgtcaattggttcaaaattctcttattgtttgcttccattgtctctt---g 40718000  T
Q  118 agtcaaacgcatcaagtatactcagttttggagatgccgctgtggtttcgggtgacgacggtgttgtgtcaactcctctaatnnnnnnngaccc---agt 214  Q
    ||||||||    |||| | |||||||||||||||||||||||||||||| ||||| ||   |||| ||||||||||| || |       |||||   |||    
T  40718001 agtcaaacaggacaagcaaactcagttttggagatgccgctgtggtttctggtgagga---tgttttgtcaactcctatagtgaaaaaagaccccacagt 40718097  T
Q  215 tttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataatt 314  Q
    |||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||  | |||||   |  ||||  |||||| |||||||||||||||    
T  40718098 tttctactatttgacattggaagcatttagtgttggaaacaaaagaatagaatttggcagatcttc---aaatggtagtgatgagggtaacatcataatt 40718194  T
Q  315 gattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatccta 414  Q
    |||||||||||||| |||||  || | |||||  |  | |||| ||| ||||||||||| ||||  || |  ||||||||||| |||||||||||||| |    
T  40718195 gattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatccaa 40718294  T
Q  415 atcaacaatt 424  Q
     |||||||||    
T  40718295 ctcaacaatt 40718304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 412
Target Start/End: Original strand, 14183338 - 14183535
Alignment:
Q  212 agttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcata 311  Q
    ||||||||||| |||||||||  |||||||||||||||| ||||||||| ||||||||| ||| |||||   |  ||||| | |||||||||||||||||    
T  14183338 agttttctactatttgacattggaagcatttagtgttggtaacaaaagaatagaatttgaagggtcttc---aaatggtggtcatgaaggtaacatcata 14183434  T
Q  312 attgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatc 411  Q
    ||||||||||||||||| |||||  |||| ||| | || || |||| ||| ||||||||||| ||| |||| |||||||||||  | |||||| ||||||    
T  14183435 attgattcaggtacaacgttgacggttattccaactgatgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatc 14183534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 14183147 - 14183233
Alignment:
Q  18 atagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgcca 104  Q
    ||||||||||||||||| || || |  ||||| || |||||||||||||||||||||| ||  |||||||||||||||||| |||||    
T  14183147 atagttggccttggaggtggaccagcatctcttattacacaattgggatcatcaattgatgcaaaattctcttattgtttgttgcca 14183233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 14192295 - 14192404
Alignment:
Q  219 tactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataattgatt 318  Q
    |||| |||||||||  ||||||||||||||||||| | |||||||||| |||||||   |||  ||  ||||||| |||| |||||||||||||||||||    
T  14192295 tactatttgacattggaagcatttagtgttggaaatagaagagtagaaattggaggag-ttccaaa--tggtgataatgagggtaacatcataattgatt 14192391  T
Q  319 caggtacaacatt 331  Q
    | |||||||||||    
T  14192392 cgggtacaacatt 14192404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 14201301 - 14201350
Alignment:
Q  225 ttgacattacaagcatttagtgttggaaacaaaagagtagaatttggagg 274  Q
    ||||||||| ||||||||||||| |||||||||  | |||||||||||||    
T  14201301 ttgacattagaagcatttagtgtgggaaacaaattaatagaatttggagg 14201350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 14192124 - 14192164
Alignment:
Q  57 caattgggatcatcaattggtggtaaattctcttattgttt 97  Q
    ||||||||||| |||| ||||||||||||||| ||||||||    
T  14192124 caattgggatcctcaactggtggtaaattctcctattgttt 14192164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 14192436 - 14192492
Alignment:
Q  363 ttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcctaatcaa 419  Q
    |||||||| |||||||| |||||||||||  |||| |||||||| ||||||| ||||    
T  14192436 ttggaatctgctgtggtagatttggtgaagttagaacgtgttgacgatcctactcaa 14192492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 14201142 - 14201182
Alignment:
Q  57 caattgggatcatcaattggtggtaaattctcttattgttt 97  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  14201142 caattgggtacatcaattggtggaaaattctcttattgttt 14201182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 214 - 433
Target Start/End: Original strand, 34303063 - 34303279
Alignment:
Q  214 ttttctactttttgacattacaagcatttagtgttggaaacaaaagagtagaatttggaggctcttcggaaggtggtgatgatgaaggtaacatcataat 313  Q
    ||||||||| ||||||| || |||||||||| |||||| |||||||||||||||||| ||| || ||  ||   |||| ||| |||||||||||||||||    
T  34303063 ttttctactatttgacaatagaagcatttagcgttggagacaaaagagtagaatttgcagggtcctcaaaa---ggtgttgaagaaggtaacatcataat 34303159  T
Q  314 tgattcaggtacaacattgacacttataccatccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcct 413  Q
    ||||||| ||||||   ||||| || ||||||| || || |||||||| ||| | |||||  | || |||||||||| |||||| || ||||||||||||    
T  34303160 tgattcaagtacaattgtgacatttgtaccatctgatgtttatactaaattgaattcagcaatcgtagatttggtgacactagaacgagttgatgatcct 34303259  T
Q  414 aatcaacaattcagcctatg 433  Q
    ||||||||||| || |||||    
T  34303260 aatcaacaatttagtctatg 34303279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 34302859 - 34302942
Alignment:
Q  19 tagttggccttggaggcgggccggtgtctctcataacacaattgggatcatcaattggtggtaaattctcttattgtttggtgc 102  Q
    |||||||||||||||| || || |  ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  34302859 tagttggccttggaggtggacctgcatctctaataacacaattgggaccgtcaattggtggtaaattctcttattgtttggtgc 34302942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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