View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_11 (Length: 425)
Name: NF5745_low_11
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 2 - 410
Target Start/End: Original strand, 37019474 - 37019879
Alignment:
| Q |
2 |
gcatgtcgaagaatatatcgaaacgggggaaaccttgaagaacattctctcaaacgttgttttccaaaagaactcgttgttagatgcagtggcaacatta |
101 |
Q |
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|||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37019474 |
gcatgtggaacaagataccgaaacgggggaaaccttgaagaacattctctcaaacgttgttttccaaaagaactcgttgttagatgcagtggcaacatta |
37019573 |
T |
|
| Q |
102 |
gaagcaacaatctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtgctagtactagccattttcactcttttctttacaata |
201 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37019574 |
gaagcaatagtctcaaagaaagttcttcaaccattgatgtttctgattcagataatggtatgtgctagtactagccattttcactcttttctttacaata |
37019673 |
T |
|
| Q |
202 |
tacttactactttaattttgtgagggtgggcgtgcgtgaatatttattttaaactgtt-aataaataagagaatttttacttagatgaagaagattcaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37019674 |
----tactactttaattttgtgagggtgggcgtgcgtgaatatttattttaaattgttaaataaataagagaatttttacttagatgaagaagatttaga |
37019769 |
T |
|
| Q |
301 |
ttctttcaagtctgcagtagtctcttcaaagagacgttgtttgaggattataaatcagaagatgacaccaatggagaaatttcaaaaagaacttcttgat |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
37019770 |
ttctttcaagtctgtagtagtctcttcaaagagacgttgtttgaggattataaatcagaagatgacaccgatggagaaatttcaacaagaacttcttgat |
37019869 |
T |
|
| Q |
401 |
gagttgaaaa |
410 |
Q |
| |
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| T |
37019870 |
gagttgaaaa |
37019879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 22 - 410
Target Start/End: Original strand, 37041423 - 37041807
Alignment:
| Q |
22 |
aaacgggggaaaccttgaagaacattctctcaaacgttgttttccaaaagaactcgttgttagatgcagtggcaacattagaagcaacaatctcaaagaa |
121 |
Q |
| |
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|||| ||||| |||||| || |||||||||||||||||||||||||||||||| ||| || ||||||||||| ||| | ||| |||||||||||| |
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| T |
37041423 |
aaactggggagaccttgctgatcattctctcaaacgttgttttccaaaagaacttattgctaa---cagtggcaacagtagcaacaataatctcaaagaa |
37041519 |
T |
|
| Q |
122 |
agttcttcaaccattgatgtttctgattcagataatggtatgtg------ctagtactagccattttcactcttttctttacaatatacttactacttta |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| || ||||| | |
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| T |
37041520 |
agttcttcaaccattgatgtttctgattctgataatggtatgtgtttatactagttctagtcattttcactcttttctttacaatg--ctatctact--a |
37041615 |
T |
|
| Q |
216 |
attttgtgagggtgggcgtgcgtgaatatttattttaaactgttaataaataagagaatttttacttagatgaagaagattcagattctttcaagtctgc |
315 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||| | ||||||||| |
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| T |
37041616 |
cttttgtgagggtgggcgtgcatgaatacttattttaaactgttaataagtaagataatttttactcagatgaaaaagattcagattcatgcaagtctgc |
37041715 |
T |
|
| Q |
316 |
agtagtctcttcaaagagacgttgtttgaggattataaatcagaagatgacaccaatggagaaatttcaaaaagaacttcttgatgagttgaaaa |
410 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| ||||| ||||||||||| || ||||| |||||| ||||||| || ||||| ||||||| |
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| T |
37041716 |
---agtctctccaaagagacgtagtttgaggattatgaatcaaaagatgacacctattgagaagtttcaacaagaactcctcgatgaattgaaaa |
37041807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 22 - 410
Target Start/End: Original strand, 37024445 - 37024830
Alignment:
| Q |
22 |
aaacgggggaaaccttgaagaacattctctcaaacgttgttttccaaaagaactcgttgttagatgcagtggcaacattagaagcaacaatctcaaagaa |
121 |
Q |
| |
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|||| ||||| |||||| || ||||| |||||||||| |||||||||||||| |||| || || |||||||||| ||| | |||| ||||| |||| |
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| T |
37024445 |
aaactggggagaccttgctgatcattcactcaaacgtttgtttccaaaagaacttgttgcta-at--agtggcaacagtagcaacaacggtctcatagaa |
37024541 |
T |
|
| Q |
122 |
agttcttcaaccattgatgtttctgattcagataatggtatgtg------ctagtactagccattttcactcttttctttacaat-atacttactacttt |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| || ||| ||||||||| |
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| T |
37024542 |
agttcttcaaccattgatgtttctgattcagaaaatggcatgtgtttatactagtactagccattttcactctcttctttataacgatatatactacttt |
37024641 |
T |
|
| Q |
215 |
aattttgtgagggtgggcgtg-cgtgaatatttattttaaactgttaataaataa-gagaatttttacttagatgaagaagattcagattctttcaagtc |
312 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||| |||||||||||| || ||||||| | ||| || ||||||||||||| | |||||| |
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| T |
37024642 |
-----tgtgagggtgggcgtggcgtgaatacttattttaaaccgttaataaataaagataatttttgcgcagaataa-aagattcagattcatgcaagtc |
37024735 |
T |
|
| Q |
313 |
tgcagtagtctcttcaaagagacgttgtttgaggattataaatcagaagatgacaccaatggagaaatttcaaaaagaacttcttgatgagttgaaaa |
410 |
Q |
| |
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|||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||| |
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| T |
37024736 |
tgcagt---ctcttcaaagagacgtagtttgagaattattaatcagaagatgacaccgatggagaagtttcaacaagaacttctcgatgagttgaaaa |
37024830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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