View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_12 (Length: 402)
Name: NF5745_low_12
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 183 - 391
Target Start/End: Complemental strand, 50445485 - 50445277
Alignment:
| Q |
183 |
tcctaaagattggactacataagaataaaatgctcaacaatctgagtttccacaaattcgataaaattgtctttcaatgtttgtctttgagtggaagata |
282 |
Q |
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| T |
50445485 |
tcctaaagattggactacataagaataaaatgctcaacaatctgagtttccacaaattccataaaattgtctttcaatgtttgtctttgagtggaagata |
50445386 |
T |
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| Q |
283 |
catgattgtttctcattatgcagaatgttgatagaagactcaaacaagatgaatgactagatagaaaaagaacacagcgatgatgttatacttgcatgaa |
382 |
Q |
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| T |
50445385 |
catgattgtttctcattatgcagaatgttgatagaagactcaaataagatgaatggctagatagaaaaagaacacagcgatgatattatacttgcatgaa |
50445286 |
T |
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| Q |
383 |
gaatgcatt |
391 |
Q |
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| T |
50445285 |
gaacgcatt |
50445277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 50447646 - 50447488
Alignment:
| Q |
18 |
aagtttgtcttttaatttgctaatattttatccatgatgcctactgcttgtattattatttgaattaagtccctccttttatgagtttccacggaagaaa |
117 |
Q |
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| T |
50447646 |
aagtttgtcttttaatttgctaatattttatccatcatgcctactgcctgtattattatttgaattaagtccctccttttatgagtttccatggaagaaa |
50447547 |
T |
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| Q |
118 |
aataaaatgcttcgtgctcaccatctcaagttaagcataggttattcatgggtaatgtt |
176 |
Q |
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| T |
50447546 |
aataaaatgcttcgtgctcaccatctcaagttaagcataggttattcaggggtaatgtt |
50447488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 42486795 - 42486702
Alignment:
| Q |
78 |
tgaattaagtccctccttttatgagtttccacggaagaaaaataaaatgcttcgtgctcaccatctcaagttaagcataggttattcatgggtaatgttc |
177 |
Q |
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| T |
42486795 |
tgaattaagtcactcctttc-tgcgtttccagggaagaaaaataaa-------gtgctcaccatctcaagttaaacatcggttattcattggtagtgttc |
42486704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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