View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5745_low_13 (Length: 355)
Name: NF5745_low_13
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 48752657 - 48752977
Alignment:
| Q |
18 |
cctaaataaattgctcttaaaccccaaacaaactaaaatataaatggactaaaaaatttgcacttaaaccctcatggactgcgggttaaacatgtcggtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48752657 |
cctaaataaattgctcttaaaccccaaacaaactaaaatataaatggactaaaaaatttgcacttaaaccctcatgggctgcgggttaaacatgtcggtc |
48752756 |
T |
|
| Q |
118 |
tacacatatatatcgcggaagtctggtcaacaactctaacaacaccatatcagta-gggatttagacaccaccgtattagggttttatatttgactattt |
216 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48752757 |
tacacatatatatagcggaagtctggtcaacaactctaacaacaccatatcagtaggggatttagacaccaccgtattagggttttatatttgactattt |
48752856 |
T |
|
| Q |
217 |
gacctaactaagacactagtcaaccatgtcttctccttcttcttcaaaaagacttgatctagacggcaactcaatcaagccgataacaatctgtattatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48752857 |
gacctaactaagacactagtcaaccatgtctt---cttcttcttcaacaagacttgatctagacggcaactcaatcaagccgataacaatctgtattatt |
48752953 |
T |
|
| Q |
317 |
ggcgccggaggtttcattggttct |
340 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48752954 |
ggcgccggaggtttcattggttct |
48752977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 49051527 - 49051612
Alignment:
| Q |
255 |
cttcttcaaaaagacttgatctagacggcaactcaatcaagccgataacaatctgtattattggcgccggaggtttcattggttct |
340 |
Q |
| |
|
||||||||| ||||||| |||| || |||||| |||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||| |
|
|
| T |
49051527 |
cttcttcaacaagacttaatctcgatggcaacccaatcaagccaataacaatctgcattatcggcgctggaggtttcatcggttct |
49051612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 340
Target Start/End: Complemental strand, 15581070 - 15580887
Alignment:
| Q |
147 |
acaactctaacaacaccatatcagt-agggatttagacaccaccgtattagggttttatatttgactatttgacctaactaagacactagtcaaccatgt |
245 |
Q |
| |
|
|||||||| ||| |||||||| | | |||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||| |
|
|
| T |
15581070 |
acaactctgacaccaccatattatttagggttttagacaccaccgtattagggttttatatttgac--------ctaagtaagaaactagtccaccatgt |
15580979 |
T |
|
| Q |
246 |
cttctccttcttcttcaaaaagacttgatctagacggcaactcaatcaagccgataacaatctgtattattggcgccggaggtttcattggttct |
340 |
Q |
| |
|
|||||| ||||||| | |||||||||| ||| ||||| ||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
15580978 |
cttctc---tatcttcaacacgacttgatctcgacagcaacccaatcaaaccgataacaatctgcattatcggcgccggaggtttcatcggttct |
15580887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 15565293 - 15565352
Alignment:
| Q |
281 |
ggcaactcaatcaagccgataacaatctgtattattggcgccggaggtttcattggttct |
340 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||| || ||||||||||||| |||||| |
|
|
| T |
15565293 |
ggcaacccaatcaaaccgataacaatctgcattatcagcaccggaggtttcatcggttct |
15565352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 15577940 - 15577999
Alignment:
| Q |
281 |
ggcaactcaatcaagccgataacaatctgtattattggcgccggaggtttcattggttct |
340 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||| || ||||||||||||| |||||| |
|
|
| T |
15577940 |
ggcaacccaatcaaaccgataacaatctgcattatcagcaccggaggtttcatcggttct |
15577999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 18137209 - 18137085
Alignment:
| Q |
212 |
tatttgacctaactaagacactagtcaaccatgtcttctccttcttcttcaaaaagacttgatctagacggcaactcaatcaagccgataacaatctgta |
311 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||||||| || |||||||||||| || |||||| |||| ||||||||||||||||| | |
|
|
| T |
18137209 |
tatttgacctaagtaagaaactagtcaac-atgtcttctccttcttc---aataagacttgatctcgatggcaacccaattaagccgataacaatctgca |
18137114 |
T |
|
| Q |
312 |
ttattggcgccggaggtttcattggttct |
340 |
Q |
| |
|
|||| | | |||||||||||||||||||| |
|
|
| T |
18137113 |
ttatcgacaccggaggtttcattggttct |
18137085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University