View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_14 (Length: 349)
Name: NF5745_low_14
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 44966151 - 44965915
Alignment:
| Q |
18 |
cttttcattatggcccatctaatgtacactgtgtgt--------caccaccacacaaactgaaaaacctattttactaatcatcactcctaatctaattt |
109 |
Q |
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| T |
44966151 |
cttttcattatggcccatctaatgtacactgtgtgtgtgtgtgtcaccaccacacaaac--------ctattttactaatcatcactcctaatctaattt |
44966060 |
T |
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| Q |
110 |
catttcatttcctttacaataacaaacattttcattactcttctctctattttctttctatgttgagttcaatacatcacacttcatcctcaaaagagtt |
209 |
Q |
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| T |
44966059 |
catttc-----ctttacaataacaaacattttcattactcttctctctattttctttctatgttgagttcaatacatcacacttcatcctcaaaagagtt |
44965965 |
T |
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| Q |
210 |
tcttgtcgaatacattgatccgtcaacatcaacacccattgaagaatctg |
259 |
Q |
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| T |
44965964 |
tcttgtcgaatacattgatccgtcagcatcaacacccattgaagaatctg |
44965915 |
T |
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