View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_16 (Length: 321)
Name: NF5745_low_16
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 54904913 - 54905202
Alignment:
| Q |
13 |
aatatccatatttaacaatcattcatcaaattagcaaagtnnnnnnnnnnnntatatcattgtcacataaactcactgtcaaggccgacatgattaactg |
112 |
Q |
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| T |
54904913 |
aatatccatatttaacaatcattcatcaaattagcaaagtaaaaaaaaaa---atatcattgtcacataaactcactgtcaaggccgacatgattaactg |
54905009 |
T |
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| Q |
113 |
cagaagcaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagtcgaacatttctcatcagtatcttgttctgcttcttcctcctc |
212 |
Q |
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| T |
54905010 |
cagaaacaaattttcgatgcaactcatgatcccaaactaaacgaggcttctttcgagtcgaacatttctcatcattatcttgttctgcttcttcctcctc |
54905109 |
T |
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| Q |
213 |
agtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagatgaggtgtcttgaccatataccccatcactaatgat |
305 |
Q |
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| T |
54905110 |
agtttgttcctttctttttcgtccatgcattttattcttgttagcaatattttcagatgaggtgtcttgaccatataccccatcactaatgat |
54905202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 70 - 305
Target Start/End: Original strand, 54894523 - 54894764
Alignment:
| Q |
70 |
cattgtcacataaactcactgtcaaggccgacatgattaactgcagaagcaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgag |
169 |
Q |
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| T |
54894523 |
cattgtcatataaactcactgtcaaggccaagcagattaactatagaaacaaattttttatgcaactcgttatcccaaacaaaacgcggcttcttccgag |
54894622 |
T |
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| Q |
170 |
tcgaacatttctcatcagtatctt-----gt-tctgcttcttcctcctcagtttgttcctttctttttcgtccatgcattttattcttgttagcaatatt |
263 |
Q |
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| T |
54894623 |
ttgagtgttcctcgtcattctcttcatcagtatctgcttcttcctcctcactttgttcctttctttttcgtccatgcgttttattcttcttaggaatatt |
54894722 |
T |
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| Q |
264 |
ttcagatgaggtgtcttgaccatataccccatcactaatgat |
305 |
Q |
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| T |
54894723 |
ttcagatgaggtgtcttgaccagataccccatcactaatgat |
54894764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 305
Target Start/End: Original strand, 54888903 - 54889152
Alignment:
| Q |
71 |
attgtcacataaactcactgtcaaggccgacatgattaactgcagaagcaaattttcgatgcaactcatgatcccaaactaaacgaagcttcttttgagt |
170 |
Q |
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| T |
54888903 |
attgtcacataaactcactatcaaggccgagttgactaactatagatacaaattttttatgcagttcatcatcccaaactaaacgaggcttcttccgagt |
54889002 |
T |
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| Q |
171 |
cgaacatttctcatcagtatcttgttctgcttcttcctcctc---------------agtttgttcctttctttttcgtccatgcattttattcttgtta |
255 |
Q |
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||| | || ||||||| |||||| |||||||||||| || || | ||||||||||| ||||| ||||| | |||||||| ||||| |
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| T |
54889003 |
cgagcgttcctcatcattatcttcttctgcttcttcttcttcctcttcttcatcttcactttgttcctttattttttgtccacgggttttattcctgtta |
54889102 |
T |
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| Q |
256 |
gcaatattttcagatgaggtgtcttgaccatataccccatcactaatgat |
305 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||||| ||||||| |
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| T |
54889103 |
gcaatattttcagatgaggtgtcttgactacatatcccatcagtaatgat |
54889152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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