View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_26 (Length: 210)
Name: NF5745_low_26
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 4210756 - 4210581
Alignment:
| Q |
18 |
cactgttactgcaggcgttgtcnnnnnnnttctgcaactgatcccaagtgccgcactcttgccaaaccaatagactgatgctgcattgaaaaaacacgtc |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4210756 |
cactgttactgcaggcgttgtcaaaaaaattctgcaactgatcccaagtgccgcactcttgccaaaccaatagactgatgctgcattgaaaaaacacgtc |
4210657 |
T |
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| Q |
118 |
gaaaaatcctctccaaaatcttaacaagaagtgcaaacaggggaacactccacacctcgatcacagagtctaatag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4210656 |
caaaaatcctctccaaaatcttaacaagaagtgcaaacaggggaacactccacacctcgatcacaaagtctaatag |
4210581 |
T |
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