View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5745_low_6 (Length: 559)
Name: NF5745_low_6
Description: NF5745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5745_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 39664791 - 39664244
Alignment:
| Q |
1 |
gtgtcaaatgattcttgaatgtagcctaaaaaacccaa-aaataataaccgacactatttctaataaccccaccgtagccggctctaacgggcaagtcta |
99 |
Q |
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| T |
39664791 |
gtgtcaaatgattcttgaatgtagcctaaaaaacccaataaataataaccgacactatttctaataatcctaccgtagccggctctaacgggcaagtcta |
39664692 |
T |
|
| Q |
100 |
gacaactaccatcaattttaagaatgatgtaagaatgattactactgttccatttaatgagtctttcaccggacatagcattgaaaattaataaaaaagc |
199 |
Q |
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| T |
39664691 |
gacaactaccatcaatgttaagaatgat-----------tactattgttccatttaatgagtctttcaccagacatagcattgaaa-ttaataaaaaagc |
39664604 |
T |
|
| Q |
200 |
aaattttgcggttatccacccaccatacttgaatattgaaaccatacttcgaattttgaggttattttcttgtgggtttatccttgatacaatacaacta |
299 |
Q |
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| T |
39664603 |
aaattttgcggttatccacc----atacttcaatattgaaaccatacttcgaattttgaggttattttcttgtgggtttatccttgatacaatacaacta |
39664508 |
T |
|
| Q |
300 |
cactgttattgaatccatgattttgatgtttctgcaaccacaacatgtttgtgattgaggttgcac------tatttaactgacgttcgcgacaatattt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||| |
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| T |
39664507 |
cactgttattgaatccatgattttgatgtttctgcaaccacaacatgtttgtgattgaggttgcaccaactacatttaactgaagttctctacaatattt |
39664408 |
T |
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| Q |
394 |
tagggattgcaatgtaaccacgccatgattttgaattgcgataaggagttgcagttacaattatgttgcaaaatttatattgtagcaaaatctgaaaata |
493 |
Q |
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| T |
39664407 |
tagggattgcaatgtaaccacaccatgattttgaattgcgataaggagttgcagttacaattatgttgcaaactttatattgtagcaaaatctgaaaata |
39664308 |
T |
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| Q |
494 |
atctagccaatgtgacgccattgcgaagacttcaaaagtctttatattgcagatgcaattgcag |
557 |
Q |
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| T |
39664307 |
atctagccaatgtgacgccattgcgaagacttcaaaagtctttatattgcagatgcaattgcag |
39664244 |
T |
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