View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746-Insertion-2 (Length: 530)
Name: NF5746-Insertion-2
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Complemental strand, 34700076 - 34699562
Alignment:
| Q |
7 |
acatgaaatatgtaatatgtccttgatcaaagattatatataaatataattaattattcaaaattgaatccactcatgtatagttttcacatgagatata |
106 |
Q |
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| T |
34700076 |
acatgaaatatgtaatatgtccttgatcaaagattatatataaatataattaattattcaaaattgaatccactcatgtatagttttcacattagata-- |
34699979 |
T |
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| Q |
107 |
gtaaaagtgtgatctatcacgtatgagatggtaaattgttatcacactttaacctcttatgagatggtaaactacacacgagtgaatccattcacacaat |
206 |
Q |
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| T |
34699978 |
gttaa-gtgtgatctatcacgtatgagatggtaaattgtgatcacactttaacctcttgtgagatggtaaactacacacgagtgaatccattcacacaat |
34699880 |
T |
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| Q |
207 |
ctggagagttttgattgttgcttcctcatcatgctggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggt |
306 |
Q |
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| T |
34699879 |
ctggagagttttgattgttgcttcctcatcatgctggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggt |
34699780 |
T |
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| Q |
307 |
ttgaatttagctaattttgatagttcttcaacacttttcacaacgtcttccacgcgtgctacagtttctgtaagcaaagaaactaccgtgaccacttgaa |
406 |
Q |
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| T |
34699779 |
ttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgctacagtttcaataagcaaagaaattaccgtgaccacttgaa |
34699680 |
T |
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| Q |
407 |
ttacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcattaacattgtgtttgtgtgtgtttgaatatgattttaataa |
506 |
Q |
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| T |
34699679 |
ttacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcattaacatt------gtgtgtgtttgaatatgattttaataa |
34699586 |
T |
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| Q |
507 |
attttgtagctcttgtgtagcaat |
530 |
Q |
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| T |
34699585 |
attttgtagctcttgtgtagcaat |
34699562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 444
Target Start/End: Complemental strand, 34683611 - 34683408
Alignment:
| Q |
241 |
tggtctggcaagatcttattttgtgttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacac |
340 |
Q |
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| T |
34683611 |
tggtctggtgagatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacac |
34683512 |
T |
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| Q |
341 |
ttttcacaacgtcttccacgcgtgctacagtttctgtaagcaaagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatc |
440 |
Q |
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| T |
34683511 |
atttcacaatgtcttctacacgagctacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatc |
34683412 |
T |
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| Q |
441 |
acca |
444 |
Q |
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| T |
34683411 |
acca |
34683408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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