View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746-Insertion-4 (Length: 445)
Name: NF5746-Insertion-4
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Original strand, 33174909 - 33175344
Alignment:
| Q |
8 |
cctaggacctcgatggaactcttttgccaacaaaaataattatcgtccaggttgcactgtgaggttcaagtttaacatgaacagttgttacctatgtcat |
107 |
Q |
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| T |
33174909 |
cctaggacctcgatggaactcttttgccaacaaaaataattatcgtccaggttgcactgtgaggttcaagtttaacatgaacaattgttacctatgtcat |
33175008 |
T |
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| Q |
108 |
gtattttgaatttagtataagataccatcgtatataaatgaatatttaaatttatccttttgtaatgtaatttgtattcctaagtaagcaatgagtacca |
207 |
Q |
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| T |
33175009 |
gtattttgaatttagtataagattccatcttatataaatgaatatttaaatttatccttttgtaatgtaatttgtattcctaagtaagtaatgagtacca |
33175108 |
T |
|
| Q |
208 |
tcaattatgttgtatccattatatatgttcagattcgatgtgttggttattttttatttaacgtagggttaactgcataaaccaaatcgaatataaaaca |
307 |
Q |
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| T |
33175109 |
tcaattatgttgtatccattatatatgttcagattcgatgtgttggttattttttatttaacgtagggttaactgcataaaccaaatcgaatataaaaca |
33175208 |
T |
|
| Q |
308 |
tcgctaatccaaactatatcacaataatattacaatacaaaacaaaatattattaaataacacatagtacatcacgttacaattacaagttataataaag |
407 |
Q |
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| T |
33175209 |
tcgctaatccaaacaatatcacaataatattacaatacaaaacaaaacattattaaataacacatagtacatcacgttacaattacaagtcataataaag |
33175308 |
T |
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| Q |
408 |
ttacctaaaatattacaagtacaacactacttattc |
443 |
Q |
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| T |
33175309 |
ttacctaaaatattacaagtacaacactacttattc |
33175344 |
T |
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