View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746-Insertion-5 (Length: 311)
Name: NF5746-Insertion-5
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746-Insertion-5 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 311
Target Start/End: Complemental strand, 38872310 - 38872005
Alignment:
| Q |
5 |
acatcatcaagacaccgacatatttgattacatccctattttgctagattctacatccgtatgattcataggctatgaacaataggaacaacacaatcaa |
104 |
Q |
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| T |
38872310 |
acatcatcaagacac-gacatatttgattacatctctattttgctagattctacatccctatgattcataggctatgaacaataggaacaacacaatcat |
38872212 |
T |
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| Q |
105 |
gatgcaaataagaaagtccctcaacagcatcaacaacaattttaagtttagttgccaatccaacaaattcttcttgttactatgcagtgaagaatggtta |
204 |
Q |
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| T |
38872211 |
gatgcaaataagaaagtccctcaacagcatcaacagcaattttaagtctagttgtcaatccaacaaattcttcttgttactatgcactgaagaatggttg |
38872112 |
T |
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| Q |
205 |
ggcattataatggagcctaatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccctccgc |
304 |
Q |
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| T |
38872111 |
ggcattataacggagcctaatcttagttcggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgtccctccgc |
38872012 |
T |
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| Q |
305 |
ggcacct |
311 |
Q |
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||||||| |
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| T |
38872011 |
ggcacct |
38872005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 38875456 - 38875183
Alignment:
| Q |
11 |
tcaagacaccgacatatttgattacatccctattttgctagattctacatccgtatgattcataggctatgaacaataggaacaacacaatcaagatgca |
110 |
Q |
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| T |
38875456 |
tcaagacaccgacacatttgattacattcctattttgctagattttacatcc--------------ctatgaacaataagaacaacactatcataatgca |
38875371 |
T |
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| Q |
111 |
aataagaaagtccctcaacagcatcaacaacaattttaagtttagtt-gccaatccaacaaattcttcttgttactatgcagtgaagaatggttaggcat |
209 |
Q |
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| T |
38875370 |
aataagaaagtcccccagcagcatctacaacaattttaagtctagttagccaatccaacaaattcttcttgctactatgcaaagaagaatggttaggcat |
38875271 |
T |
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| Q |
210 |
tataatggagcctaatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtcatctacttcgcccct |
300 |
Q |
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| T |
38875270 |
tatagaggagcctaatcttagttaggcatggcaaagtacatatagtttttttgtaacaacaataaatctcgtcg---tctacttcgcccct |
38875183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 38868330 - 38868216
Alignment:
| Q |
77 |
ctatgaacaataggaacaacacaatcaagatgcaaataagaaagtccctcaacagcatcaacaacaattttaagtttagtt-gccaatccaacaaattct |
175 |
Q |
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| T |
38868330 |
ctatgaacaataggaacaacacaatcatggtgcaaataagaaagtccctcagcagcatcaacagcaattttaagtcttgttggccaatccaacaaattct |
38868231 |
T |
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| Q |
176 |
tcttgttactatgca |
190 |
Q |
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| T |
38868230 |
tcttgctactatgca |
38868216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 38786159 - 38786228
Alignment:
| Q |
216 |
ggagcctaatcttagttaggcatgacaaagtatatatagtttttctgtgacaacaataaatctcgtcgtc |
285 |
Q |
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| T |
38786159 |
ggagcctaatcttaattaggcatgacaaagtacatatagtttttctataacaacaataaatcccgtcgtc |
38786228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 38782527 - 38782576
Alignment:
| Q |
207 |
cattataatggagcctaatcttagttaggcatgacaaagtatatatagtt |
256 |
Q |
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| T |
38782527 |
cattatagcggagcctaatcttagttaggcatgacaaagtacatatagtt |
38782576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 38778189 - 38778245
Alignment:
| Q |
207 |
cattataatggagcctaatcttagttaggcatgacaaagtatatatagtttttctgt |
263 |
Q |
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| T |
38778189 |
cattatagaggagcctaatcttagttaggcatgatcaagtacatatggtttttctgt |
38778245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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