View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746-Insertion-6 (Length: 266)
Name: NF5746-Insertion-6
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 53423068 - 53422822
Alignment:
| Q |
13 |
tttttctaaatgcagcaactcaagttaacaatttgaaggatcccattacaacggatttagggtcgattgccacaccttatgactatggagcaggggaaat |
112 |
Q |
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|||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
113 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacataggatacaatacaacccacaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
213 |
taaggctatctcaaaaaccgcctctggtagtttcagttgccctaagg |
259 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgccctaagg |
53422822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 53431035 - 53430785
Alignment:
| Q |
8 |
cctattttttctaaatgcagcaactcaagttaacaatttgaaggatcccattacaacggatttagggtcgattgccacaccttatgactatggagcaggg |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431035 |
cctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggt |
53430936 |
T |
|
| Q |
108 |
gaaattacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacataggatacaatacaaccc |
207 |
Q |
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| T |
53430935 |
gaaataacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaa-ca |
53430837 |
T |
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| Q |
208 |
acaattaaggctatctcaaaaaccgcctctggtagtttcagttgccctaagg |
259 |
Q |
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|| ||||||| ||| |||||||| | | ||| || ||||| |||||||||| |
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| T |
53430836 |
actattaaggttatttcaaaaactgtccctgataatttcaactgccctaagg |
53430785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 26095415 - 26095172
Alignment:
| Q |
15 |
tttctaaatgcagcaactcaagttaacaatttgaaggatcccattacaacggatttagggtcgattgccacaccttatgactatggagcaggggaaatta |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||| |||| || | |
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| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
115 |
caatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacataggatacaatacaacccacaatta |
214 |
Q |
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||| | ||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||| |||| |
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| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaa-ccaccatta |
26095217 |
T |
|
| Q |
215 |
aggctatctcaaaaaccgcctctggtagtttcagttgccctaagg |
259 |
Q |
| |
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||| ||| |||||||| | | ||| |||||||| |||||||||| |
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| T |
26095216 |
aggttatttcaaaaactgtccctgatagtttcaactgccctaagg |
26095172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 48374785 - 48375002
Alignment:
| Q |
12 |
ttttttctaaatgcagcaactcaagttaacaatttgaaggatcccattacaacggatttagggtcgattgccacaccttatgactatggagcaggggaaa |
111 |
Q |
| |
|
||||||| | |||||||||| ||| |||| ||| |||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
112 |
ttacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacataggatacaatacaacccacaa |
211 |
Q |
| |
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| |||| | |||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||| | |
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| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaa-ccacta |
48374983 |
T |
|
| Q |
212 |
ttaaggctatctcaaaaac |
230 |
Q |
| |
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|||||| ||| |||||||| |
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| T |
48374984 |
ttaaggttatttcaaaaac |
48375002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 53307870 - 53307637
Alignment:
| Q |
13 |
tttttctaaatgcagcaactcaagttaacaatttgaaggatcccattacaacggatttagggtcgattgccacaccttatgactatggagcaggggaaat |
112 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||||| ||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
113 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacataggatacaatacaacccacaat |
212 |
Q |
| |
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|||| | ||||| |||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| |||| | |
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| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaa-ccacggt |
53307672 |
T |
|
| Q |
213 |
taaggctatctcaaaaaccgcctctggtagtttca |
247 |
Q |
| |
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||| |||||| ||||||||| ||| |||||||| |
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| T |
53307671 |
gaagattatctctaaaaccgcccctgatagtttca |
53307637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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