View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_1 (Length: 832)
Name: NF5746_high_1
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 112 - 415
Target Start/End: Original strand, 33053716 - 33054004
Alignment:
| Q |
112 |
gacaaccgatgacatataaaataagtgaattgtttcaatcaatatttttaaaatatannnnnnnnacaatttttatcaatagataattatgaaaattata |
211 |
Q |
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| T |
33053716 |
gacaaccgataacatataaattaagtgaattgtttcaatgaatat------aatatattttttttacaatttttatcaatagataattatgaaaattgta |
33053809 |
T |
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| Q |
212 |
tactgtcacatgtcaaacagtcaactatgcatacaatacaactcagacgaatatagtattaaaaagcataatgttcacgtatttacatttcaatattaaa |
311 |
Q |
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| T |
33053810 |
tattgtcacatgtcaaacagtcaactaggc-----atacaactcagacgaatatagtattaaaaagcataatgttcacgtatttacacttcaatattaaa |
33053904 |
T |
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| Q |
312 |
gtcgaatatactatgtccaaatattaaagtcgaatattaccaaatttccagatactaatgagttgtaaataaatgtagaagttctccaccttttaatatg |
411 |
Q |
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| T |
33053905 |
gtcgaatatactatgtccaaatattaaagtcgaatattaccaaatttccagatactaatgagttg----taaatgtagaagttctccaccttttaatatg |
33054000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 466 - 654
Target Start/End: Original strand, 33054234 - 33054427
Alignment:
| Q |
466 |
gatgaggaagaggtggcccatacaccagaatcacaaacatgacagtacacaacccaac-----agcctctcatactttcttcttcagcaatggtcatcac |
560 |
Q |
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| T |
33054234 |
gatgaggaagaggtggcccatacaccagaatcacaaacatgacagtacacaacacaacacaacagcctctcatactttcttcttcagcaatggtcatcac |
33054333 |
T |
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| Q |
561 |
aaccctgtcttgcagatacatgggccccacttgcatgtgcattactctccgagttctccccattcttctcactcttattcgtaactaaccaaaa |
654 |
Q |
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| T |
33054334 |
taccctgtctttcagatacatgggccccacttgcatgtgcattactctccgagttctccccattcttctcactcttattcgtaactaaccaaaa |
33054427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 737 - 816
Target Start/End: Original strand, 33054512 - 33054591
Alignment:
| Q |
737 |
tcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttcc |
816 |
Q |
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| T |
33054512 |
tcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttcc |
33054591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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