View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_100 (Length: 235)
Name: NF5746_high_100
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_100 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 39875734 - 39875537
Alignment:
| Q |
25 |
tgtagagttggaaacttcttttatgactgttatatagaaatgatgagttttgaattaggaat-gatttgtttggaacatgcatatttcagagtatggaat |
123 |
Q |
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| T |
39875734 |
tgtatagtttgaaacttattttgtgactgttatatagaaatgttgagttttggattaggatttgatttgttagaaacatgcatatttcagagtatggaat |
39875635 |
T |
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| Q |
124 |
ggattctcaattatcaacaaaaggcgacatgtacagctttgggattcttcttttggagatgttaactgggagaaggccaactgatgaaatgtttaaag |
221 |
Q |
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| T |
39875634 |
ggatactcaattgtcaacagaaggcgacatgtatagctttgggattcttcttttggagatgatgactgggagaagaccaactgatgaaatgtttaaag |
39875537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 39890811 - 39890614
Alignment:
| Q |
25 |
tgtagagttggaaacttcttttatgactgttatatagaaatgatgagttttgaattaggaat-gatttgtttggaacatgcatatttcagagtatggaat |
123 |
Q |
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| T |
39890811 |
tgtatagtttgaaacttattttgtgactgttatatagaaatgttgagttttggattaggatttgatttgttagaaacatgcatatttcagagtatggaat |
39890712 |
T |
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| Q |
124 |
ggattctcaattatcaacaaaaggcgacatgtacagctttgggattcttcttttggagatgttaactgggagaaggccaactgatgaaatgtttaaag |
221 |
Q |
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| T |
39890711 |
ggatactcaattgtcaacagaaggcgacatgtatagctttgggattcttcttttggagatgatgactgggagaagaccaaccgatgaaatgtttaaag |
39890614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 39883857 - 39883661
Alignment:
| Q |
25 |
tgtagagttggaaacttcttttatgactgttatatagaaatgatgagttttgaattaggaatgatttgtttggaacatgcatatttcagagtatggaatg |
124 |
Q |
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| T |
39883857 |
tgtatagtttgaaactgattttgtgaatgttatacataaatgatgagttttgaatttgaaatgattagtttgaaatatgcatatttcagagtatggaatg |
39883758 |
T |
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| Q |
125 |
gattctcaattatcaacaaaaggcgacatgtacagctttgggattcttcttttggagatgttaactgggagaaggccaactgatgaaatgtttaaag |
221 |
Q |
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| T |
39883757 |
gattctcaattgtcaacagaaggcgacatgtacagctttgggactcttcttatggagatgttcaccgggagaagaccaactgatgcaatgtttaaag |
39883661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 39898792 - 39898669
Alignment:
| Q |
98 |
aacatgcatatttcagagtatggaatggattctcaattatcaacaaaaggcgacatgtacagctttgggattcttcttttggagatgttaactgggagaa |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39898792 |
aacatgcatattttagagtatggaatggattctcaattgtcaagagaagtcgacatgtacagctttgggattcttcttttggagatgttaactgggagaa |
39898693 |
T |
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| Q |
198 |
ggccaactgatgaaatgtttaaag |
221 |
Q |
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| T |
39898692 |
gaccaactgatgaaatgtttaaag |
39898669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 10559374 - 10559479
Alignment:
| Q |
112 |
agagtatggaatggattctcaattatcaacaaaaggcgacatgtacagctttgggattcttcttttggagatgttaactgggagaaggccaactgatgaa |
211 |
Q |
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|||||||||||||| |||| || | || ||| | || |||||||| ||||||||||| ||| | ||||| ||| | || || ||||| |||||||||||| |
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| T |
10559374 |
agagtatggaatgggttctgaagtttccacacatggtgacatgtatagctttgggatgcttatattggaaatgattacaggaagaagaccaactgatgaa |
10559473 |
T |
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| Q |
212 |
atgttt |
217 |
Q |
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|||||| |
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| T |
10559474 |
atgttt |
10559479 |
T |
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