View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_101 (Length: 235)
Name: NF5746_high_101
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_101 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1544400 - 1544629
Alignment:
| Q |
1 |
tagctcaaggatgttaggtctgtgatgtgatatattcttctcagctaagaagccgagatacacagtacgacacagaaaaatattcacattgctaattact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1544400 |
tagctcaaggatgttaggtctgtgatgtgatatattcttctcagctaagaagccgagatacacagtacgacacagaaaaatattcacattgctaattact |
1544499 |
T |
|
| Q |
101 |
ctttaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagttacata-ttgttcccctacctatat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
1544500 |
ctttaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagttacatatttgtttccctacctatat |
1544599 |
T |
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| Q |
200 |
cagtatatagattttctaatatgaatctgt |
229 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1544600 |
cagtatatagattttctaatatgaatctgt |
1544629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1548253 - 1548435
Alignment:
| Q |
1 |
tagctcaaggatgttaggtctgtgatgtgatatattcttctcagctaagaagccgagatacacagtacgacacagaaaaatattcacatt-gctaattac |
99 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||||||| |
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| T |
1548253 |
tagctcaaggatgttacgtctgtggtgtgatatattcttctcagctaagaagccgagatacacaatacgatacagaaaaacatttacatttgctaattac |
1548352 |
T |
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| Q |
100 |
tctttaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagttacatat |
182 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1548353 |
tcattaaaactgaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagtaacatat |
1548435 |
T |
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