View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_102 (Length: 234)
Name: NF5746_high_102
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_102 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4028497 - 4028716
Alignment:
| Q |
1 |
tttggttaacaacggtttggtgcattgtgttggaatgccatgatatcattttcaacagaaaagtcgctaatgttcttgcggtggttggtcgaattaagcg |
100 |
Q |
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| T |
4028497 |
tttggttaacaacagtttggtgcattttgttggaatgccatgatatcattttcaacagaaaagtcgctaatgttcttgcggtggttggtcgaattaagcg |
4028596 |
T |
|
| Q |
101 |
aatatcatggtcttggttcatttgcatggagtgtaggaataaaaatttagtattatcggattggtggactaatccacttgttggtctttaaactgttctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028597 |
aatatcatggtcttggttcatttgcatggagtgtaggaataaaaatttagtattatcggattggtggactaatccacttgttggtctttaaactgttctg |
4028696 |
T |
|
| Q |
201 |
cttcttgacagagagtcattat |
222 |
Q |
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|| |||||||||||||||||| |
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| T |
4028697 |
ct--ttgacagagagtcattat |
4028716 |
T |
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