View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_high_110 (Length: 212)

Name: NF5746_high_110
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_high_110
NF5746_high_110
[»] chr8 (3 HSPs)
chr8 (1-165)||(21634595-21634759)
chr8 (47-197)||(21604724-21604874)
chr8 (70-197)||(21607289-21607416)
[»] chr3 (13 HSPs)
chr3 (39-197)||(38043923-38044081)
chr3 (47-197)||(38028736-38028886)
chr3 (47-197)||(38040051-38040201)
chr3 (59-199)||(50911851-50911991)
chr3 (63-197)||(38024861-38024995)
chr3 (63-197)||(38031313-38031447)
chr3 (39-197)||(55084806-55084964)
chr3 (39-197)||(38033737-38033899)
chr3 (39-192)||(50909985-50910138)
chr3 (47-197)||(38036763-38036913)
chr3 (39-197)||(50904754-50904912)
chr3 (59-200)||(48840694-48840834)
chr3 (1-38)||(38044425-38044462)
[»] chr4 (50 HSPs)
chr4 (39-197)||(17970319-17970477)
chr4 (97-199)||(27502827-27502929)
chr4 (70-187)||(27563339-27563456)
chr4 (70-194)||(27415644-27415768)
chr4 (70-173)||(27503966-27504069)
chr4 (70-173)||(27475572-27475675)
chr4 (70-192)||(27570042-27570164)
chr4 (70-173)||(27514935-27515038)
chr4 (70-191)||(27412690-27412811)
chr4 (61-197)||(27431132-27431268)
chr4 (70-157)||(27468320-27468407)
chr4 (70-157)||(27524584-27524671)
chr4 (70-188)||(27585717-27585835)
chr4 (73-194)||(27425835-27425956)
chr4 (70-182)||(27420443-27420555)
chr4 (61-197)||(27444778-27444914)
chr4 (61-197)||(27526096-27526232)
chr4 (61-197)||(27557509-27557645)
chr4 (61-155)||(27554371-27554465)
chr4 (70-195)||(27478876-27479001)
chr4 (77-173)||(27411456-27411552)
chr4 (71-195)||(27485937-27486061)
chr4 (77-197)||(27513776-27513896)
chr4 (61-173)||(27567299-27567411)
chr4 (63-186)||(27423253-27423376)
chr4 (104-191)||(27527187-27527274)
chr4 (79-194)||(27565953-27566068)
chr4 (104-194)||(27497349-27497439)
chr4 (70-192)||(27506723-27506845)
chr4 (79-197)||(27507815-27507933)
chr4 (70-175)||(27508894-27508999)
chr4 (78-155)||(27571685-27571762)
chr4 (61-197)||(27487003-27487139)
chr4 (61-197)||(27500322-27500458)
chr4 (61-200)||(27473909-27474048)
chr4 (81-152)||(27490025-27490096)
chr4 (78-197)||(27498435-27498554)
chr4 (78-155)||(27419072-27419149)
chr4 (60-197)||(27460498-27460635)
chr4 (60-197)||(27476707-27476844)
chr4 (97-197)||(27424534-27424634)
chr4 (61-197)||(27479921-27480057)
chr4 (77-197)||(27505702-27505822)
chr4 (61-197)||(27523387-27523523)
chr4 (105-197)||(27556407-27556499)
chr4 (97-191)||(27414324-27414418)
chr4 (79-197)||(27501337-27501455)
chr4 (77-130)||(27559240-27559293)
chr4 (97-197)||(27469480-27469580)
chr4 (97-197)||(27540027-27540127)
[»] chr2 (1 HSPs)
chr2 (39-197)||(3073589-3073747)
[»] chr5 (2 HSPs)
chr5 (70-195)||(1756750-1756875)
chr5 (70-186)||(1754719-1754835)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 21634759 - 21634595
Alignment:
Q  1 gtatgatttcttttctgcatttcgttttcaattccgttattgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgccca 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21634759 gtatgatttcttttctgcattttgttttcaattccgttattgaatcgagaagtaacacgcaagaaaacatcttcggtgcaaggaattgtgaagccgccca 21634660  T
Q  101 ttcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21634659 ttcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattc 21634595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 21604724 - 21604874
Alignment:
Q  47 gagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtc 146  Q
    ||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| |||| |||||||| |||||||||||  ||||||||| || ||     
T  21604724 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgtt 21604823  T
Q  147 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||| ||||  || |||||||||||| ||||||| ||||| ||||||||    
T  21604824 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcat 21604874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 21607289 - 21607416
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||  |||| ||| |||||| | ||||||||||||||||||||||||||||||||||  |||| |||||| ||||   | |||||||    
T  21607289 tcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagctcggttcaagt 21607388  T
Q  170 atgacatggggatcacaaaccgcttcat 197  Q
    ||||||||||||| ||||||||||||||    
T  21607389 atgacatggggataacaaaccgcttcat 21607416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 38044081 - 38043923
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  38044081 attgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactc 38043982  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  38043981 agcaagtcttgaaacgaagtttgattcaagtatgacatagggatcacaaaccgcttcat 38043923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 38028736 - 38028886
Alignment:
Q  47 gagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtc 146  Q
    ||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||| || ||     
T  38028736 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggtt 38028835  T
Q  147 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||| ||||  || |||||||||||| ||||||| ||||| ||||||||    
T  38028836 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcat 38028886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 38040051 - 38040201
Alignment:
Q  47 gagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtc 146  Q
    ||||||||| | |||||||||||||||| |||||||||||||||| |||||||||| |||| |||||||| ||||||||||| |||||||||| || ||     
T  38040051 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggtt 38040150  T
Q  147 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||| ||||  || |||||||||||| ||||||| ||||| ||||||||    
T  38040151 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcat 38040201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 59 - 199
Target Start/End: Original strand, 50911851 - 50911991
Alignment:
Q  59 gcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagt 158  Q
    ||||||||||  |||| |||||||||||||| | ||| |||||| | |||||||||||||||||||||||||||||||||| ||||| |||||| ||||     
T  50911851 gcaagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagc 50911950  T
Q  159 atgattcaagtatgacatggggatcacaaaccgcttcatct 199  Q
     || |||||||||||| |||||||||||||||| |||||||    
T  50911951 ttggttcaagtatgacttggggatcacaaaccgtttcatct 50911991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 38024861 - 38024995
Alignment:
Q  63 gaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatga 162  Q
    ||||| |||||| ||||||||||| |||| ||| |||||| | ||||||||||||||||||||||||||||||||||  |||| |||||| ||||  ||     
T  38024861 gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttgg 38024960  T
Q  163 ttcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  38024961 ttcaagtatgacatggggataacaaaccgcttcat 38024995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 38031313 - 38031447
Alignment:
Q  63 gaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatga 162  Q
    ||||| |||||| ||||||||||| |||| ||| |||||| | ||||||||||||||||||||||||||||||||||  |||| |||||| ||||  ||     
T  38031313 gaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttgg 38031412  T
Q  163 ttcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  38031413 ttcaagtatgacatggggataacaaaccgcttcat 38031447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 55084964 - 55084806
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| |||||||||| | | |||||||| ||||| |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||| ||  |||||    
T  55084964 attgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactc 55084865  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | |||||||||||| || |  || |||||||| ||||| ||||||||||||||||||||    
T  55084864 aacaagtcttgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcat 55084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 38033737 - 38033899
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattc----gatgatcatatccaaattcttcctctgcttg 134  Q
    |||||| |||||||||| | |||||||||| ||||| ||||| |||||||||| ||||||||||     |||| |||||||||||||||||||| |||||    
T  38033737 attgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattcttcctcggcttg 38033836  T
Q  135 actcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    ||||| ||||| |||||| ||||  || |||||||||||| ||||||| ||||||||||||||    
T  38033837 actcaacaagttttgaaatgaagcttggttcaagtatgacgtggggataacaaaccgcttcat 38033899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 50910138 - 50909985
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| ||||||||||   ||||||| || ||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||||||  ||||| ||    
T  50910138 attgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattc 50910039  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgc 192  Q
    | ||||| |||||| ||||  || |||||||||||||||||||| |||||||||    
T  50910038 aacaagttttgaaatgaagcttggttcaagtatgacatggggataacaaaccgc 50909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 38036763 - 38036913
Alignment:
Q  47 gagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtc 146  Q
    ||||||||| | |||||||||||| ||| |||||||||||||||| |||||||||| |||| |||||||| ||||||||||| |||||||||| ||| |     
T  38036763 gagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaatt 38036862  T
Q  147 ttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |||||| ||||  || |||||||||| ||||||||  |||||||| |||||    
T  38036863 ttgaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcat 38036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 50904754 - 50904912
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| |||||||| | | |||| ||||| |||||  |||||||||| |||| ||| |||||| ||||||||||||| ||||| ||||||||| |||||    
T  50904754 attgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactc 50904853  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | |||||||||||| ||||| || |||||||| |||||  |||||||||||||||||||    
T  50904854 aacaagtcttgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcat 50904912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 48840694 - 48840834
Alignment:
Q  59 gcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagt 158  Q
    |||||||||| ||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||| |||  ||| ||||| |||||||||||| || |     
T  48840694 gcaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggc 48840792  T
Q  159 atgattcaagtatgacatggggatcacaaaccgcttcatctc 200  Q
     || |||||||||| ||||||||| ||||| |||||||||||    
T  48840793 ttggttcaagtatggcatggggattacaaatcgcttcatctc 48840834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38044462 - 38044425
Alignment:
Q  1 gtatgatttcttttctgcatttcgttttcaattccgtt 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38044462 gtatgatttcttttctgcatttggttttcaattccgtt 38044425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 17970477 - 17970319
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| | |||||||||| |||| ||||| ||||| |||||||||||||||| ||| |||||| ||||||| ||||| ||||||||||||||  |||||    
T  17970477 attgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactc 17970378  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    ||||||| |||||| ||||| || |||||||||||| | ||||||||||||||||||||    
T  17970377 agcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcat 17970319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 27502827 - 27502929
Alignment:
Q  97 cccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttca 196  Q
    |||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||    
T  27502827 cccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttca 27502926  T
Q  197 tct 199  Q
    |||    
T  27502927 tct 27502929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 27563339 - 27563456
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||||||||| ||||| || |||||||||||||| ||||||||| | || || |||||||    
T  27563339 tcttcagtgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagt 27563438  T
Q  170 atgacatggggatcacaa 187  Q
    |||| | |||||||||||    
T  27563439 atgatacggggatcacaa 27563456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 27415768 - 27415644
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||| |||| ||| |||||   ||||||||||||||| |||||||| |||||||||| ||||||||||||||| |  || |||||||    
T  27415768 tcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagt 27415669  T
Q  170 atgacatggggatcacaaaccgctt 194  Q
    |||| |||||||||||||| |||||    
T  27415668 atgatatggggatcacaaatcgctt 27415644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 27504069 - 27503966
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||| |||||||| |||||||||| |||||||||||| ||||  || |||||||    
T  27504069 tcttcggtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagt 27503970  T
Q  170 atga 173  Q
    ||||    
T  27503969 atga 27503966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 27475572 - 27475675
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||| ||||||||| |||| ||| |||||  |||||||||||||||| |||||||| |||||||||| |||||||||||| ||||  ||||||||||    
T  27475572 tcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagt 27475671  T
Q  170 atga 173  Q
    ||||    
T  27475672 atga 27475675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 27570042 - 27570164
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||||||||||||| |||| ||| |||||  ||||||||||||| || |||||||| ||||||||||||||||||||||| ||||  ||  | ||||    
T  27570042 tcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagt 27570141  T
Q  170 atgacatggggatcacaaaccgc 192  Q
    |||| | |||||||||| |||||    
T  27570142 atgatacggggatcacataccgc 27570164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 27515038 - 27514935
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| || |||||||| |||| ||| |||||  ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||  ||||||||||    
T  27515038 tcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagt 27514939  T
Q  170 atga 173  Q
    ||||    
T  27514938 atga 27514935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 27412811 - 27412690
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||| |||| ||| |||||| |||||||||||||||| ||||| || ||||||||||  |||||||||||  | |  || |||||||    
T  27412811 tcttccgtgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagt 27412712  T
Q  170 atgacatggggatcacaaaccg 191  Q
    |||| || ||||||||||||||    
T  27412711 atgatattgggatcacaaaccg 27412690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 27431132 - 27431268
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||||||||||  |||||||||||||||  || ||  || |||| ||||||||||||| |||||| |||||| ||| ||| |||||||| || |  |    
T  27431132 aagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggtt 27431231  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | ||||||||||| || ||||||||||||| ||||||    
T  27431232 ggttcaagtatgatattgggatcacaaacctcttcat 27431268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 27468320 - 27468407
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaag 157  Q
    ||||| ||||||||||| |||| ||| |||||  ||||||||||||||||||||||||| | |||||||| |||||||||||| ||||    
T  27468320 tcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaag 27468407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 27524671 - 27524584
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaag 157  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||||||||| |||||||| |||||| ||| |||||||||||| ||||    
T  27524671 tcttcggtgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaag 27524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 27585835 - 27585717
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||| ||||  || |||||| |||||||||||||||| ||||| || |||||||||| ||| ||||||||| | |  || |||||||    
T  27585835 tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagt 27585736  T
Q  170 atgacatggggatcacaaa 188  Q
    |||| | ||||||||||||    
T  27585735 atgatacggggatcacaaa 27585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 27425956 - 27425835
Alignment:
Q  73 tcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatg 172  Q
    |||||||||||||| |||| ||| |||||  |||||||||||||||| ||||||||   ||||||||  ||||||||||| || |  || ||||||||||    
T  27425956 tcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatg 27425857  T
Q  173 acatggggatcacaaaccgctt 194  Q
    | || ||||||||| |||||||    
T  27425856 atattgggatcacataccgctt 27425835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 27420555 - 27420443
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||| |||| ||| |||||  |||||||||||||||| ||||||||  |||||||||||||| ||||||| ||||  ||  ||||||    
T  27420555 tcttccgtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagt 27420456  T
Q  170 atgacatggggat 182  Q
    |||| | ||||||    
T  27420455 atgatacggggat 27420443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 27444778 - 27444914
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||||||||||  |||||||||||||||  || |||||| |||| |||||||| |||| |||||| |||||| |||  || |||||||| || |  |    
T  27444778 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgatt 27444877  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    |  |||||||||| || ||||||||||||| ||||||    
T  27444878 ggctcaagtatgatattgggatcacaaacctcttcat 27444914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 27526096 - 27526232
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||||||||||  |||||||||| ||||  || ||| || ||||||||||| |||||| |||||| ||||| |||| ||| ||||| || || || |    
T  27526096 aagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggttt 27526195  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | ||||||||||| |  || |||||||||||||||||    
T  27526196 ggttcaagtatgatacaggaatcacaaaccgcttcat 27526232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 27557645 - 27557509
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    |||||||| |||||  |||| ||||| ||||  || |||||| ||||| ||||| |||||| |||||| |||||| ||||||| |||||||| || |  |    
T  27557645 aagaaaacatcttctctgcatggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggtt 27557546  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | || ||||||||||| ||||||||||||| ||||||    
T  27557545 ggtttaagtatgacattgggatcacaaacctcttcat 27557509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 27554465 - 27554371
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 155  Q
    ||||||||||||||  | |||||||||||||  |  ||| || |||||||||||||||||| |||||| |||||| ||||||| |||||||||||    
T  27554465 aagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacga 27554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 27478876 - 27479001
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||| ||||||||| |||| ||| |||||  |||||||||||||||||||||| || ||||||   ||||| ||||||||| | |  || |||||||    
T  27478876 tcttcggagcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagt 27478975  T
Q  170 atgacatggggatcacaaaccgcttc 195  Q
    |||| || ||||  ||||||||||||    
T  27478976 atgatattgggacaacaaaccgcttc 27479001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 27411456 - 27411552
Alignment:
Q  77 tgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatga 173  Q
    |||||||||||||||  || |||||  |||||||||||||||||||||| ||||||||| | || || ||||||||||| |  || |||||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatga 27411552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 27485937 - 27486061
Alignment:
Q  71 cttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagta 170  Q
    |||| ||||||||||| |||| ||| |||||  |||||||||||||||||||||| || ||||||   ||||| ||||||||| | |  || ||||||||    
T  27485937 cttcagtgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagta 27486036  T
Q  171 tgacatggggatcacaaaccgcttc 195  Q
    ||| || ||||  ||||||||||||    
T  27486037 tgatattgggacaacaaaccgcttc 27486061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 27513776 - 27513896
Alignment:
Q  77 tgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacat 176  Q
    |||||||||| ||||  || |||||| ||||||||||| || ||| ||| || |||||  ||| ||| ||||| ||||| || || ||||||||||| ||    
T  27513776 tgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttcaacaattcttggaacgaggtttggttcaagtatgatat 27513875  T
Q  177 ggggatcacaaaccgcttcat 197  Q
     ||||||||||||||||||||    
T  27513876 tgggatcacaaaccgcttcat 27513896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 27567411 - 27567299
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    |||||| | |||||| |||||||||||||||  || |||||| |||||||||| ||||||||||| |||| |||| | || || ||||||||||| |  |    
T  27567411 aagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggtt 27567312  T
Q  161 gattcaagtatga 173  Q
    | |||||||||||    
T  27567311 ggttcaagtatga 27567299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 27423376 - 27423253
Alignment:
Q  63 gaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatga 162  Q
    |||||| ||||| ||||||||||  |||| ||| |||||  ||||||  || ||||| |||||||| |||||||||| ||| |||||||| ||||  ||     
T  27423376 gaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttgg 27423277  T
Q  163 ttcaagtatgacatggggatcaca 186  Q
    ||||||||||| ||| ||||||||    
T  27423276 ttcaagtatgatatgcggatcaca 27423253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 27527274 - 27527187
Alignment:
Q  104 gatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccg 191  Q
    |||||||||||||||| |||||||| |||||||||||||| ||| ||||||| |  || || |||| ||| || ||||||||||||||    
T  27527274 gatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcacaaaccg 27527187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 27565953 - 27566068
Alignment:
Q  79 caaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatgg 178  Q
    |||||||| |||| ||| |||||| ||||||||||||||   ||||||||  ||||  ||||||||||||||||| | |  || |||| |||||| ||||    
T  27565953 caaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgtatcagcaagtcttgaaacaatggttggttcaggtatgatatgg 27566052  T
Q  179 ggatcacaaaccgctt 194  Q
    |||||||||| |||||    
T  27566053 ggatcacaaatcgctt 27566068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 27497349 - 27497439
Alignment:
Q  104 gatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgctt 194  Q
    |||||||||||||||| |||||||| |||||||||| ||| | ||||||| | |  || || |||||||| || |||||||||||||||||    
T  27497349 gatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagatagggatcacaaaccgctt 27497439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 27506845 - 27506723
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| ||||||||||| ||||  || |||||  |||||||||||||||||||||| || ||||||   ||||| ||||||||| | |  || || ||||    
T  27506845 tcttcagtgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagt 27506746  T
Q  170 atgacatggggatcacaaaccgc 192  Q
    |||| || |||||||||||||||    
T  27506745 atgatattgggatcacaaaccgc 27506723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 27507815 - 27507933
Alignment:
Q  79 caaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatgg 178  Q
    ||||||||||| |  || |||||| |||| |||||||||||||||||  | || || || ||||| |||||||  ||||| |||||||| |||||||| |    
T  27507815 caaggaattgtaagaccacccattggatggtcatatccaaattcttcgacagcctggctgagcaactcttgaagtgaagtttgattcaaatatgacattg 27507914  T
Q  179 ggatcacaaaccgcttcat 197  Q
    | || ||||||||||||||    
T  27507915 gaattacaaaccgcttcat 27507933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 27508999 - 27508894
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||| ||| ||||| |||| ||| ||| || |||||||||||||||| |||||||| || ||| ||| |||||||||||| ||||  || ||||| |    
T  27508999 tcttcggagcatggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaat 27508900  T
Q  170 atgaca 175  Q
    ||||||    
T  27508899 atgaca 27508894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 27571762 - 27571685
Alignment:
Q  78 gcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 155  Q
    ||||||||||||||  || |||||| |||||||||||||||||||||| |||| |||| | || || |||||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacga 27571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 27487139 - 27487003
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||| ||||||  |||||||||| || |  || |||||| ||||||||||| |||||| ||| || |||||  ||| ||| ||||||||||| |  |    
T  27487139 aagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggtt 27487040  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | || |||||||| |  ||||||||||||||||||||    
T  27487039 ggtttaagtatgataaagggatcacaaaccgcttcat 27487003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 27500322 - 27500458
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||| ||||||  |||||||||| |||| ||| |||||| |||| |||||||| || | ||| || | ||| |||||||| ||||| || ||| | |    
T  27500322 aagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaacttt 27500421  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | || |||||||| || ||||||||||| ||||||||    
T  27500422 ggtttaagtatgatatagggatcacaaatcgcttcat 27500458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 27474048 - 27473909
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||||||||||   ||||||||| ||||  || |||||| ||||||||||| |||||| ||||||   ||| |||||||| ||||| || ||  | |    
T  27474048 aagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgattttt 27473949  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcatctc 200  Q
    | ||||| ||||| || ||||||||||| | |||||||||    
T  27473948 gcttcaaatatgatatagggatcacaaatctcttcatctc 27473909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 27490096 - 27490025
Alignment:
Q  81 aggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 152  Q
    |||||| |||| ||| |||||| |||||||||||||||| |||||||| |||||| ||| ||| ||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaa 27490025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 27498554 - 27498435
Alignment:
Q  78 gcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatg 177  Q
    ||||||||| ||||  || |||||| ||||||||||| | |||| |||||| |||||  ||| ||||||||| ||||| |  || ||||||||||| ||     
T  27498554 gcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgatata 27498455  T
Q  178 gggatcacaaaccgcttcat 197  Q
    ||||||||||| || |||||    
T  27498454 gggatcacaaaacgtttcat 27498435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 27419072 - 27419149
Alignment:
Q  78 gcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacga 155  Q
    |||||||||||| |  || |||||| |||||||||||||||||||||| |||| |||| | || || |||||||||||    
T  27419072 gcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacga 27419149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 27460635 - 27460498
Alignment:
Q  60 caagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagta 159  Q
    |||||||| ||||||  |||||||||| ||||  || |||||| ||||||||||| |||||| ||||||   ||| |||||||| ||||| || ||  |     
T  27460635 caagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatgatttt 27460536  T
Q  160 tgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    || ||||| ||||| || ||||||||||| | ||||||    
T  27460535 tgcttcaaatatgatatagggatcacaaatctcttcat 27460498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 27476844 - 27476707
Alignment:
Q  60 caagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagta 159  Q
    |||||||| ||||||  |||||||||| || |  || |||||| ||||||||||| |||||| ||||||   ||| |||||||  ||||| || || ||     
T  27476844 caagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggtt 27476745  T
Q  160 tgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    || ||||||||||| |  || |||||||||||||||||    
T  27476744 tggttcaagtatgatacaggaatcacaaaccgcttcat 27476707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 27424534 - 27424634
Alignment:
Q  97 cccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttca 196  Q
    |||||| |||||||||||||| ||||||| || | |||| | ||||| |||||||| ||||  || ||||||||||| |  || |||||||||||| |||    
T  27424534 cccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcctca 27424633  T
Q  197 t 197  Q
    |    
T  27424634 t 27424634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 27480057 - 27479921
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||| ||||||  |||||||||| ||||  || |||||| ||||||||||| |||||| |||||| |||||  ||| ||| | ||| || || || |    
T  27480057 aagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgttt 27479958  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | ||||||||||| |  || |||||||| ||||||||    
T  27479957 ggttcaagtatgatacaggaatcacaaaacgcttcat 27479921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 27505702 - 27505822
Alignment:
Q  77 tgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacat 176  Q
    |||||||||| ||||  || |||||| |||| |||||| |||||| |||||| |||||  ||| ||| ||||| || || || || ||||||||||| |     
T  27505702 tgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgatac 27505801  T
Q  177 ggggatcacaaaccgcttcat 197  Q
     || |||||||||||||||||    
T  27505802 aggaatcacaaaccgcttcat 27505822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 27523387 - 27523523
Alignment:
Q  61 aagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtat 160  Q
    ||||||| ||||||  |||||||||| || |  || |||||| |||| |||||| |||||| |||||| ||||  |||| ||| ||||| || ||||| |    
T  27523387 aagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattcttggaatgaagttt 27523486  T
Q  161 gattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    | ||||| ||||| |  || |||||||||||||||||    
T  27523487 ggttcaaatatgatacaggaatcacaaaccgcttcat 27523523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 27556407 - 27556499
Alignment:
Q  105 atgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    ||||||||||||||||||||| |||||||||   || || |||||||| ||||  || |||||  |||| ||||| |||||||| ||||||||    
T  27556407 atgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaatgggaatcacaaatcgcttcat 27556499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 27414324 - 27414418
Alignment:
Q  97 cccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccg 191  Q
    |||||| |||||||||||||||||||||| |||| |||| | || || |||||||| || |  || ||||||||||| |  || |||||||||||    
T  27414324 cccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatcacaaaccg 27414418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 27501455 - 27501337
Alignment:
Q  79 caaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatgg 178  Q
    |||||||| ||||  || ||| || ||||||| ||| |||||| |||||| |||||  ||| ||||||||||||| | |  || || |||||||| || |    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattg 27501356  T
Q  179 ggatcacaaaccgcttcat 197  Q
    ||||||||||||| |||||    
T  27501355 ggatcacaaaccgtttcat 27501337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 27559240 - 27559293
Alignment:
Q  77 tgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctg 130  Q
    |||||||||||||||  || |||||| |||||||||||||||| ||||| ||||    
T  27559240 tgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctg 27559293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 27469580 - 27469480
Alignment:
Q  97 cccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttca 196  Q
    |||||| |||| |||||| |||||| ||| || ||||| |||| ||  ||||| || || || || ||||| ||||| || |||||||||||||||||||    
T  27469580 cccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatatagggatcacaaaccgcttca 27469481  T
Q  197 t 197  Q
    |    
T  27469480 t 27469480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 27540127 - 27540027
Alignment:
Q  97 cccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttca 196  Q
    |||||| ||||||  || ||||||||||||||||| |  || |||||||||||||| ||||  ||||||||| ||   || || ||||| ||||||||||    
T  27540127 cccattggatgatggtacccaaattcttcctctgccttgcttagcaagtcttgaaatgaaggttgattcaagcatccaataggaatcacgaaccgcttca 27540028  T
Q  197 t 197  Q
    |    
T  27540027 t 27540027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 3073747 - 3073589
Alignment:
Q  39 attgaatcgagaagtaacacgcaagaaaacgtcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactc 138  Q
    |||||| | |||||||||| |||| ||||| ||||| |||||||||||||||| ||| |||||| ||||||| ||||| ||||||||||||||  |||||    
T  3073747 attgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactc 3073648  T
Q  139 agcaagtcttgaaacgaagtatgattcaagtatgacatggggatcacaaaccgcttcat 197  Q
    ||||||| |||||| ||||| || |||||||||||| | ||||||||||||||||||||    
T  3073647 agcaagtattgaaatgaagtttggttcaagtatgacgtagggatcacaaaccgcttcat 3073589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 1756750 - 1756875
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||||||||||||||| |||| ||| |||||  | |||||||||||||||||||| || |||||||||| ||||| ||||||||| |  || |||||||    
T  1756750 tcttcggtgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagt 1756849  T
Q  170 atgacatggggatcacaaaccgcttc 195  Q
    |||| || ||||||||||||||||||    
T  1756850 atgatattgggatcacaaaccgcttc 1756875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 1754835 - 1754719
Alignment:
Q  70 tcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtatgattcaagt 169  Q
    ||||| |||||| |||| |||| ||| |||||| |||||||||||||||| |||||| | |||||||||| ||||  ||||||||| |  ||||||||||    
T  1754835 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgattcaagt 1754736  T
Q  170 atgacatggggatcaca 186  Q
    |||| || |||||||||    
T  1754735 atgatattgggatcaca 1754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University