View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_116 (Length: 205)
Name: NF5746_high_116
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_116 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 3562969 - 3562791
Alignment:
| Q |
6 |
caataatatcattgctgcaatctctttaacaggtaacaatacactcaaaacgtccaaatcctcagtcagggacttgatcattctaaagaagtgtaatgtc |
105 |
Q |
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| T |
3562969 |
caataatatcattgctgcaatctctttaacaggtaacaatacactcaaaacgtccaaatcctcagtcagggacttgatcattctaaagaagtgtaatgtc |
3562870 |
T |
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| Q |
106 |
aacattcatgctccaaaggctccagtcatcaaagaaataatttggcagcccccatatcaaaactggttgaagtgcaata |
184 |
Q |
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| T |
3562869 |
aacattcatgctccataggctccagtcatcaaagaaataatttggcagcccccatatcaaaactggttgaagtgcaata |
3562791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 9749414 - 9749376
Alignment:
| Q |
102 |
tgtcaacattcatgctccaaaggctccagtcatcaaaga |
140 |
Q |
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| T |
9749414 |
tgtcaacattcatgctccaaaggcaccaatcatcaaaga |
9749376 |
T |
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