View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_13 (Length: 534)
Name: NF5746_high_13
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 530
Target Start/End: Complemental strand, 37119147 - 37118632
Alignment:
| Q |
13 |
accatgtacacttaagcttgattgccgtagcttaactaattattatgaagggggattcataatatcagcattaaagtacaatgtactactctctccattc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119147 |
accatgtacacttaagcttgattgccgtagcttaactaagtattatgaagggggattcataatatcagcattaaagtacaatgtactactctctccattc |
37119048 |
T |
|
| Q |
113 |
tacatattgtaggtggtgtagtgttcacatggcatccttcatcaatttgtatagtggtccaaatttttcttgtatgtcatatccatttatcataactacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37119047 |
tacatattgtaggtggtgtagtgttcacatggcatccttcatcaatttgtatagtggtccaaatttttcttgtatgtcatatccatttgtcataactacg |
37118948 |
T |
|
| Q |
213 |
taatcatacttagcctaatgtgtacatggtttcattattctttctgttaggatgaacgaaaaatttcattacaagtagcattatttcatcgtgccactgt |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37118947 |
taatcatacttagcctaatgtgtacagggtttcattattctttctgttaggataaatgaaaaatttcattacaagtagcattatttcatcgtgccactgt |
37118848 |
T |
|
| Q |
313 |
gggatatgacaaaaccgttgtggttcttctcaattctagccttaccttcaatgaatgaacttgggagtgtatatacccagttagccttgttgtattgaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37118847 |
gggatatgacaaaaccgttgtggttcttctcaattctagccttaccttcaatgaatgaacttgggagtgtatatacccagttagccttgttgtattgaat |
37118748 |
T |
|
| Q |
413 |
tattgagacctgcttaaaacatggtttggaatggnnnnnnnnnnnnntagaaattatgtggtgggggtgatggaagaaaaatagggggaaagttcatcct |
512 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
37118747 |
tattgagacctgcttaaaacatggtttggaatgg--aaaaagaaaaatagaaattatgtggtggtggtgatggaagaaaaatagggtgaaagttcatcct |
37118650 |
T |
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| Q |
513 |
gtttaggaggctgaggag |
530 |
Q |
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|||| ||||||||||||| |
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| T |
37118649 |
gtttgggaggctgaggag |
37118632 |
T |
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