View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_19 (Length: 461)
Name: NF5746_high_19
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 3883781 - 3884214
Alignment:
| Q |
18 |
catattttattctgaactggtctgaagaataagtgcctgtttgatcttacattttacgatggatgcggcgtatttacatttatagtttgatattgcctgt |
117 |
Q |
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| T |
3883781 |
catattttattctgaactggtctgaagaataggtgcctgtttgatcttacattttacgatggatgcgg-gtatttacatttatagtttgatattgcctgt |
3883879 |
T |
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| Q |
118 |
ttctataacatgaatgcatatttacaattatattttgatgaaattttcatatatgcacatgatcaaatggaatcagtgtgcatgaacttatttgaatcaa |
217 |
Q |
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| T |
3883880 |
ttctttaacatgaatgcatatttacaattatattttgatgaaattttcatatatgcacgagatcaaatggaatcagtgtgcatgaacttatttgaatcaa |
3883979 |
T |
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| Q |
218 |
cattcgatctgccagtctcaaacctacaccatcaaaccaacccttgcgggttagatttttccaaacttgttgatttgccataaagtgtgcatgaatttat |
317 |
Q |
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| T |
3883980 |
cattcgatctgccagtctcaaacctacaccatcaaaccaacccttgcgggttagatttttccaaacttgttgatttgccataaagtgtgcatgaatttat |
3884079 |
T |
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| Q |
318 |
tgattttccaaacctacactatcaattatatcttgattttaagaggatgcattggattatacaaggagtctctaggttaaaaataagatatatctctcat |
417 |
Q |
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| T |
3884080 |
tgattttccaaacctacactatcaattatatcttgattttaagtggacgcattggattatacaaggagtctctaggttaaaaataagatatatctctcat |
3884179 |
T |
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| Q |
418 |
cttttagccaaatttggttctttttgcagtataat |
452 |
Q |
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| T |
3884180 |
cttttagccaaatttggttctttttgcagtataat |
3884214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 3870464 - 3870612
Alignment:
| Q |
40 |
tgaagaataagtgcctgtttgatcttacattttacgatggatgcggcgtatttacatttatagtttgatattgcctgtttctataacatgaatgcatatt |
139 |
Q |
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| T |
3870464 |
tgaagaatagatgcttgtttgaacttacattttgcgatggttg-gacgaattg-catttgtagtttgatactgtctgtttcttta-catgattgcatatt |
3870560 |
T |
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| Q |
140 |
tacaattata--ttttgatgaaattttcatatatgcacatgatcaaatggaa |
189 |
Q |
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| T |
3870561 |
tacaattatatattttgatgaaattttaatatatgcacaacatcaaatggaa |
3870612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 448
Target Start/End: Original strand, 3872836 - 3872867
Alignment:
| Q |
417 |
tcttttagccaaatttggttctttttgcagta |
448 |
Q |
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| T |
3872836 |
tcttttagccaaatttggttctttttgcagta |
3872867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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