View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_23 (Length: 445)
Name: NF5746_high_23
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 23904301 - 23903867
Alignment:
| Q |
19 |
actactcccttcttcttcttcgcgcctgtgattctttctactcttcatcatattgaaattggaaggttctaaacctttcaagagttgagtctgaggagga |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| |
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| T |
23904301 |
actactcccttcttcttcttcgcgcccgtgattctttctactcttcatcatattgaaattggatgattctaaaccagtcaagagttgaggctgaggagga |
23904202 |
T |
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| Q |
119 |
agaaacttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgccaacatattggtaatagatgaatcga |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
23904201 |
agaaacttgttggcttcttcaaaacctctattgaattgagaaacagaatctgcattactgaaaatgttctctgccaacatattggtaatagatgaatcga |
23904102 |
T |
|
| Q |
219 |
aatttacgagtccatcactaacactacttgaagcacaggaa------------------ttaacaagatcagaaacaggagtatcaggtgaaaagggttt |
300 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904101 |
aatttatgggtccatcactaacactacttgaagcacaggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggttt |
23904002 |
T |
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| Q |
301 |
cgactcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggggaaagagcatcatggaatgatttttctgtg |
400 |
Q |
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| T |
23904001 |
cgactcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggtgaaagagcatcatggaatgatttttctgtg |
23903902 |
T |
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| Q |
401 |
atttgtaagctaagtggatcataaaaaggtctctg |
435 |
Q |
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| T |
23903901 |
atttgtaagctaagtggatcataaaaaggtctctg |
23903867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 23922683 - 23923117
Alignment:
| Q |
19 |
actactcccttcttcttcttcgcgcctgtgattctttctactcttcatcatattgaaattggaaggttctaaacctttcaagagttgagtctgaggagga |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| |
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| T |
23922683 |
actactcccttcttcttcttcgcgcccgtgattctttctactcttcatcatattgaaattggatgattctaaaccagtcaagagttgaggctgaggagga |
23922782 |
T |
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| Q |
119 |
agaaacttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgccaacatattggtaatagatgaatcga |
218 |
Q |
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| T |
23922783 |
agaaacttgttggcttcttcaaaacctctattgaattgagaaacagaatctgcattactgaaaatgttctctgccaacatattggtaatagatgaatcga |
23922882 |
T |
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| Q |
219 |
aatttacgagtccatcactaacactacttgaagcacagga------------------attaacaagatcagaaacaggagtatcaggtgaaaagggttt |
300 |
Q |
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| T |
23922883 |
aatttatgggtccatcactaacactacttgaagcacaggaattaaactgaaaaccatgattaacaagatcagaaacaggagtatcaggtgaaaagggttt |
23922982 |
T |
|
| Q |
301 |
cgactcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggggaaagagcatcatggaatgatttttctgtg |
400 |
Q |
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| T |
23922983 |
cgactcgtgagaatcgtcgatgctgctgttactattactattgcaactggtgctggttgtgccattaggtgaaagagcatcatggaatgatttttctgtg |
23923082 |
T |
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| Q |
401 |
atttgtaagctaagtggatcataaaaaggtctctg |
435 |
Q |
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| T |
23923083 |
atttgtaagctaagtggatcataaaaaggtctctg |
23923117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 23912834 - 23912930
Alignment:
| Q |
98 |
aagagttgagtctgaggaggaagaaacttgttagcttcttcaaaacctctattgaattgggaaacagaatctgcattactgaaaatgttatgtgcca |
194 |
Q |
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| T |
23912834 |
aagagttgaggctgcggaggaagaaacttgttggcttcttctaaacttttattgaatagagaaacagaatctgcatcactgaaaatgttttgtgcca |
23912930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 23913183 - 23913246
Alignment:
| Q |
372 |
aaagagcatcatggaatgatttttctgtgatttgtaagctaagtggatcataaaaaggtctctg |
435 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
23913183 |
aaagagcatcatagaatgatttttctgtcatttgtaagctaagtgggtcataaaacggtctctg |
23913246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 23913025 - 23913102
Alignment:
| Q |
259 |
attaacaagatcagaaacaggagtatcaggtgaaaagggtttcgactcgtgagaatcgtcgatgctgctgttactatt |
336 |
Q |
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| T |
23913025 |
attaacatgatcagaaacaggagtatcaggtgaaaggggttttgactctcgagaatcgtcgacgctgctattgctatt |
23913102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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