View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_25 (Length: 442)
Name: NF5746_high_25
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 40729129 - 40728720
Alignment:
| Q |
14 |
cataggtagccattgaagaaaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatca |
113 |
Q |
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| T |
40729129 |
cataggtagccattgaagaaaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatca |
40729030 |
T |
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| Q |
114 |
taatttcatggaggaaaatcttcagccaaatcaccttaactctcatcctccctctttccttcatcttccttattcacatacaaatatccaacatcctctt |
213 |
Q |
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| T |
40729029 |
taatttcatggaggaaaatcttcagccaaatcaccttaactctcatcctccctctttccttcatcttccttattcacatacaaatatccaacatcctctt |
40728930 |
T |
|
| Q |
214 |
cagaaagattatgaacaacacaaatgaaattttggaaacacaacaaggcacacctcaataccaaaaactttccgacataatcacttccgaatggaccact |
313 |
Q |
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| T |
40728929 |
cagaaagattatgaacaacacaaatgaaattttggaaacacaacaaggcacacctcaataccaaaaactttccgacataatcacttccgaatggaccact |
40728830 |
T |
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| Q |
314 |
ttcttgctctttaaacttgtttacttcacttctcttctaatcttctctttgctatcaacctctgcagtggtttatacaatagcatctatttatactgcaa |
413 |
Q |
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| T |
40728829 |
ttcttgctctttaaacttgtttacttcacttctcttctaatcttctctttgctatcaacctctgcagtggtttatacaatagcatctatttatactgcaa |
40728730 |
T |
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| Q |
414 |
gagaggtaac |
423 |
Q |
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| T |
40728729 |
gagaggtaac |
40728720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 10107232 - 10107382
Alignment:
| Q |
33 |
aaaacaaaaccatggatagagaacaagaagagatgcaatttctaggactctttggaatctacaaagaatcctacaagatcataatttcatggaggaaaat |
132 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||| || ||||||| |||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
10107232 |
aaaacaaaaccatggacaaagaacaagaagacatgcaatttcttggtttctttggttgctacaaagaatccttcaagatcatattttcatggagaaaaat |
10107331 |
T |
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| Q |
133 |
cttcagccaaatcaccttaactctcatcctccctctttccttcatcttcct |
183 |
Q |
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| T |
10107332 |
cttcacacaaatcaccttaactcttctcctacctctctccttcatcttcct |
10107382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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