View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_30 (Length: 412)
Name: NF5746_high_30
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 14158341 - 14157964
Alignment:
| Q |
13 |
aaaatcaaagatttcaaagtagaagatgattttgagaagcataaggaagaagttgaaaatcttctgttaggtttaaaagttcggttcacttacaaggcaa |
112 |
Q |
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| T |
14158341 |
aaaatcaaagatttcaaagtagaagatgattttgagaagcataaggaagaagttgaaaatcttctgttaggtttaaaagttcggttcacttacaaggcaa |
14158242 |
T |
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| Q |
113 |
ggagactggagaccttacaaggttgttggagtaacatctaacaatgtaagagagataggtgtctaccatgaatccaaaaccatctccctcgtcgaatatt |
212 |
Q |
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| T |
14158241 |
ggagactggagaccttacaaggttgttggagtaagatctaacaatgtaagagagataagtgtctaccatgaatccaaaaccatctccgtcgtcgaatatt |
14158142 |
T |
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| Q |
213 |
acaagnnnnnnnntatgatgttgatgttgtacatcatgatcttcctggagttgttttgagaataaaaagaggtaaagacaagtttgtttcatttgagttg |
312 |
Q |
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| T |
14158141 |
acaag-aaaaaaatatgatgttgatgttgtacatcatgatcttcctggagttgttttgagaataaaaagaggtaaagacaagtttgtttcatttgagttg |
14158043 |
T |
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| Q |
313 |
tgcactgtagctgaaaagcaatcaactttctatgctcaaatgcatggactacacatctgacattgattttataggtacc |
391 |
Q |
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| T |
14158042 |
tgcactgtagctgaaaagcaatcaactttctatgctcaaatgcatggactacacatctgacattgattttataggtacc |
14157964 |
T |
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