View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5746_high_33 (Length: 395)
Name: NF5746_high_33
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 37 - 388
Target Start/End: Complemental strand, 2308325 - 2307974
Alignment:
| Q |
37 |
ccattaactagctctcatataataatattacacaactcctcgatctttgtttcattttgcttattttttaagatgctacttagaagctcctctgcaccaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308325 |
ccattaactagctctcatataataatattacataactccttgatctttgtttcattttgcttattttttaagatgctacttagaagctcctctgcaccaa |
2308226 |
T |
|
| Q |
137 |
ttctaagttcattgttaccctataattcaaaagagtcctctcttgagctagaacatactcttaagcttcctagaacaatatcatttttaagtctaagcca |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308225 |
ttctaagttcattgttaccctataattcaaaagagtcctctcttgagctagaacatactcttaagcttcctagaacaatatcatttttaagtctaagcca |
2308126 |
T |
|
| Q |
237 |
aaatttagccaagttagaccttcaaaactcatcaagtcctaaaaaaccatttcttgtgccatgtagtaatgttctaagtacaaatatgaacgnnnnnnnc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2308125 |
aaatttagccaagttagaccttcaaaactcatcaagtcctaaaaaaccatttcttgtgccatgtagtaatgttctaagtacaaatatgaacgaaaaaaac |
2308026 |
T |
|
| Q |
337 |
aaagtgaaagaggctaagatggtgcaaacttcagtgatgggtgggggtgtga |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308025 |
aaagtgaaagaggctaagatggtgcaaacttcagtgatgggtgggggtgtga |
2307974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 2308356 - 2308325
Alignment:
| Q |
17 |
ataccctcatccctttatctccattaactagc |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2308356 |
ataccctcatccctttatctccattaactagc |
2308325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University