View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_34 (Length: 391)
Name: NF5746_high_34
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 1138867 - 1139225
Alignment:
| Q |
16 |
atgtagtaacactgttgcaatagattatcccaccaattttgaatatgcaactaaagcataccaaagaaggaaggtaaaattcgaagtcatatgttagcaa |
115 |
Q |
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| T |
1138867 |
atgtagtaacactgttgcaatagattatcccgccaatattgaatatgcaactaaagcatacctaagaaggaaggtaaaatttgaagtcatatgttagcaa |
1138966 |
T |
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| Q |
116 |
ccatattctttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaatgcgtgatattatatcatagacttagcactatttttga |
215 |
Q |
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| T |
1138967 |
ccatattttgtgcgtagccttttattccatttcaatcgtatgccactttttgaactgagtaatgcgtgatattatatcatagacttagcactatttttga |
1139066 |
T |
|
| Q |
216 |
aatcaatgactgaattggaatcacttataccaaccaagtatgacaccatatagatattaaaaaatcaagtgtaaactcaattgaagtgcaatgatcaata |
315 |
Q |
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| T |
1139067 |
aatcaatgactgaattggaatcacttataccaaccaagtatgacaccatatagatattaaaaaatcaagcgtaaactcaattgaagtgcaatgatcaata |
1139166 |
T |
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| Q |
316 |
ttttttagtataccatgagatttgcttgtaacagctgctccaagtctttatgatcaaca |
374 |
Q |
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| T |
1139167 |
ttttttagtataccatgaggtttgcttgtaacacctgctccaagtctttatgatcaaca |
1139225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 48119173 - 48119056
Alignment:
| Q |
79 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattctttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaa |
177 |
Q |
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| T |
48119173 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattctttatgtggccttttagttcatctcaattgtatggcacttgttgaactgagtaa |
48119074 |
T |
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| Q |
178 |
tgcgtgatattatatcat |
195 |
Q |
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||| |||||||||||||| |
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| T |
48119073 |
tgcatgatattatatcat |
48119056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 272
Target Start/End: Original strand, 10207421 - 10207575
Alignment:
| Q |
116 |
ccatattctttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaatgcgtgatattatatcat-agacttagcacta-ttttt |
213 |
Q |
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||||||| ||| ||| ||||||| | ||| ||||| |||| ||| | |||||||||||||||| ||||||||||| || ||||||| ||| ||||| |
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| T |
10207421 |
ccatattttttatgtagccttttagttcatctcaattgtatgtcacttgttgaactgagtaatgcatgatattatataatgagacttactgctacttttt |
10207520 |
T |
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| Q |
214 |
gaaatcaatgactgaattggaatcacttataccaaccaagtatgacaccatatagatat |
272 |
Q |
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| T |
10207521 |
gaaatcaatgaccgaaatgaaatcactta----aaccaagcatgacaccatatagatat |
10207575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 367
Target Start/End: Original strand, 36334074 - 36334176
Alignment:
| Q |
265 |
atagatattaaaaaatcaagtgtaaactcaattgaagtgcaatgatcaatattttttagtataccatgagatttgcttgtaacagctgctccaagtcttt |
364 |
Q |
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|||||||| |||||||||| ||| ||||||| ||||||| | |||||||| |||| || || ||||| ||| ||||||| ||||||||||| || || |
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| T |
36334074 |
atagatatgaaaaaatcaattgtgaactcaaatgaagtgaactgatcaatgttttctatattattatgagctttacttgtaatagctgctccaaatcatt |
36334173 |
T |
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| Q |
365 |
atg |
367 |
Q |
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||| |
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|
| T |
36334174 |
atg |
36334176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 51034271 - 51034332
Alignment:
| Q |
247 |
aaccaagtatgacaccatatagatattaaaaaatcaagtgtaaactcaattgaagtgcaatgatc |
311 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||| |||||||||| |||| ||||| |
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| T |
51034271 |
aaccaaatatgacagcatatagatattaaaaa---aagtgtaatctcaattgaactgcactgatc |
51034332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 41475416 - 41475368
Alignment:
| Q |
79 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattcttt |
126 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
41475416 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattcttt |
41475368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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