View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_high_4 (Length: 662)

Name: NF5746_high_4
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_high_4
NF5746_high_4
[»] chr1 (8 HSPs)
chr1 (224-453)||(41711601-41711830)
chr1 (18-150)||(41711395-41711527)
chr1 (467-648)||(41711917-41712091)
chr1 (349-391)||(30795704-30795746)
chr1 (349-389)||(15382835-15382875)
chr1 (349-397)||(22946566-22946614)
chr1 (349-389)||(26329138-26329178)
chr1 (355-391)||(51989327-51989363)
[»] chr4 (10 HSPs)
chr4 (347-398)||(26238592-26238643)
chr4 (349-388)||(48251924-48251963)
chr4 (349-391)||(12439667-12439709)
chr4 (350-388)||(15175147-15175185)
chr4 (349-391)||(39411757-39411799)
chr4 (349-391)||(42756122-42756164)
chr4 (351-391)||(10069106-10069146)
chr4 (349-389)||(20403184-20403224)
chr4 (349-389)||(36203241-36203281)
chr4 (349-397)||(51298712-51298760)
[»] chr7 (8 HSPs)
chr7 (349-388)||(41250063-41250102)
chr7 (349-389)||(5458087-5458127)
chr7 (349-388)||(4955445-4955484)
chr7 (350-393)||(31723421-31723464)
chr7 (349-396)||(39280834-39280881)
chr7 (349-395)||(25602916-25602962)
chr7 (349-389)||(30296338-30296378)
chr7 (349-389)||(41029277-41029317)
[»] chr8 (6 HSPs)
chr8 (351-397)||(11759022-11759068)
chr8 (349-388)||(29652224-29652263)
chr8 (349-396)||(44019547-44019594)
chr8 (351-389)||(2060540-2060578)
chr8 (349-391)||(9055421-9055463)
chr8 (349-401)||(31888019-31888071)
[»] chr6 (6 HSPs)
chr6 (351-396)||(12276249-12276294)
chr6 (349-396)||(26832955-26833002)
chr6 (349-394)||(32149138-32149183)
chr6 (372-400)||(2747401-2747429)
chr6 (349-389)||(18256888-18256928)
chr6 (349-389)||(33824886-33824926)
[»] chr3 (9 HSPs)
chr3 (351-396)||(35492791-35492836)
chr3 (349-391)||(4216415-4216457)
chr3 (349-395)||(21549037-21549083)
chr3 (349-391)||(38894040-38894082)
chr3 (349-391)||(45096029-45096071)
chr3 (351-396)||(19599156-19599201)
chr3 (349-389)||(6901470-6901510)
chr3 (349-389)||(13800672-13800712)
chr3 (349-389)||(47099051-47099091)
[»] chr2 (7 HSPs)
chr2 (349-389)||(12893260-12893300)
chr2 (351-391)||(37670499-37670539)
chr2 (350-395)||(4589734-4589779)
chr2 (349-402)||(4693074-4693127)
chr2 (351-391)||(13835673-13835713)
chr2 (349-389)||(17280964-17281004)
chr2 (349-389)||(32458307-32458347)
[»] scaffold0083 (1 HSPs)
scaffold0083 (350-396)||(45941-45987)
[»] chr5 (5 HSPs)
chr5 (351-396)||(1669598-1669643)
chr5 (349-389)||(18147571-18147611)
chr5 (349-389)||(29962363-29962403)
chr5 (349-389)||(30012395-30012435)
chr5 (355-395)||(36795813-36795853)
[»] scaffold0077 (1 HSPs)
scaffold0077 (349-397)||(8684-8732)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 6e-76; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 224 - 453
Target Start/End: Original strand, 41711601 - 41711830
Alignment:
Q  224 gatcttagaacattctataggccaagtaaatgtatatacatatcttaaaacttgtatagtcaaaatcttaagtatnnnnnnntttgttttcaatgaaaca 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  41711601 gatcttagaacattctataggccaagtaaatgtatatacatatcttaaaacttgtatagtcaaaatcttaagtataaaaaaaattgttttcaatgaaaca 41711700  T
Q  324 gnnnnnnnnaactagttagtatgatccttgcatatagtatacattgttcttatcaactgagctaagtttacggaaactgaaatcgagtattttaaatggt 423  Q
             |||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||| ||  |||||||||||||||||||||||||    
T  41711701 attttttttaactagttagtatgatacttgcatatattatgcattgttcttatcaactgagttaagtttatggggactgaaatcgagtattttaaatggt 41711800  T
Q  424 gtcgtatatacaatgtcaaaattatgtgag 453  Q
    ||| ||||||||||||||||||||||||||    
T  41711801 gtcatatatacaatgtcaaaattatgtgag 41711830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 41711395 - 41711527
Alignment:
Q  18 aatcaggcccataattgtatataaactataaagtagatttcatcaaggctatctaaataatttatacttttacagaattacttttcacgtgaatgtcttt 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41711395 aatcaggcccataattgtatataaactatgaagtagatttcatcaaggctatctaaataatttatacttttacagaattacttttcacgtgaatgtcttt 41711494  T
Q  118 taaataaaatgatttgtgtgtcctaaaaaattg 150  Q
    |||||||||||||||||||||||||||||||||    
T  41711495 taaataaaatgatttgtgtgtcctaaaaaattg 41711527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 467 - 648
Target Start/End: Original strand, 41711917 - 41712091
Alignment:
Q  467 tttgttgataaacattcaacaaggcaatcaggaacttgaatttatgtatataatataattgtaaaatggcttaaatgtgccacaccttcctatattttcc 566  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||    
T  41711917 tttgttgataaacattcaacgaggcaatcaggaacttgaatttatgtatat-----aattgtaaaatggcttaaatgtgccacaccttcctatattttcc 41712011  T
Q  567 aaaatatcagtcgtcaacaaattactaaactgtggcaaacacaaatnnnnnnnnnnccaaagtttgctaatacacgatcaaa 648  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||    
T  41712012 aaaatatcaatcgtcaacaaattactaaactgtggcagacacaaat--aaaaaaaaccaaagtttgctaatacacgatcaaa 41712091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 30795746 - 30795704
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||    
T  30795746 ccttgcatatattatgcattgttcttaccaactgagctaagtt 30795704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 15382835 - 15382875
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  15382835 ccttgcatatattatacattgttcatatcaactgagttaag 15382875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 22946566 - 22946614
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgga 397  Q
    ||||||||||| ||| ||||||||||| ||||| ||||||||| |||||    
T  22946566 ccttgcatatattatgcattgttcttaccaactaagctaagttcacgga 22946614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 26329138 - 26329178
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    |||||||| || ||| |||||||||||||||||||||||||    
T  26329138 ccttgcatgtattatgcattgttcttatcaactgagctaag 26329178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 51989363 - 51989327
Alignment:
Q  355 atatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  51989363 atatattatacattgttcttattaactgagctaagtt 51989327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 26238592 - 26238643
Alignment:
Q  347 atccttgcatatagtatacattgttcttatcaactgagctaagtttacggaa 398  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  26238592 atccttgcatatattatacattattcttatcaactgagctaaatttacggaa 26238643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 48251924 - 48251963
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaa 388  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  48251924 ccttgcatatattatacattgttcatatcaactgagctaa 48251963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 12439709 - 12439667
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||    
T  12439709 ccttgcatatattatgcattgtccttatcaactgagctaagtt 12439667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 15175185 - 15175147
Alignment:
Q  350 cttgcatatagtatacattgttcttatcaactgagctaa 388  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  15175185 cttgcatatattatacattattcttatcaactgagctaa 15175147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 39411799 - 39411757
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||    
T  39411799 ccttgcatatattatacattgttcttaccaactgagataagtt 39411757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 42756122 - 42756164
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||    
T  42756122 ccttgcatatattatgcattgtccttatcaactgagctaagtt 42756164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 10069106 - 10069146
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  10069106 ttgcatatattatacattgttcataccaactgagctaagtt 10069146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 20403184 - 20403224
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||||| ||||||||||||||||    
T  20403184 ccttgcatatattatgcattgttcctatcaactgagctaag 20403224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 36203281 - 36203241
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  36203281 ccttgcatatattatgcattgtccttatcaactgagctaag 36203241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 51298712 - 51298760
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgga 397  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||| |||||    
T  51298712 ccttgcatatattatatattgtccttatcaactgagttaagttcacgga 51298760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 41250063 - 41250102
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaa 388  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  41250063 ccttgcatatattatacattgttcttatcaactgagctaa 41250102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 5458087 - 5458127
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  5458087 ccttgcatatattatgcattgttcttatcaactgagctaag 5458127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 4955445 - 4955484
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaa 388  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  4955445 ccttgcatatattatacgttgttcttatcaactgagctaa 4955484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 31723421 - 31723464
Alignment:
Q  350 cttgcatatagtatacattgttcttatcaactgagctaagttta 393  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||    
T  31723421 cttgcatatattatatattgttcttatcaactgagttaagttta 31723464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 39280834 - 39280881
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  39280834 ccttgcatatattatgcattgttcttaccaactgagctaagttcacgg 39280881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 25602962 - 25602916
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacg 395  Q
    ||||||||||| ||| ||||||||||||||| ||||||||| |||||    
T  25602962 ccttgcatatattatgcattgttcttatcaattgagctaagcttacg 25602916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 30296378 - 30296338
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||| |||| |||||||||||||    
T  30296378 ccttgcatatattatacattgtccttaccaactgagctaag 30296338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 41029317 - 41029277
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||| |||| |||||||||||||    
T  41029317 ccttgcatatattatacattgtccttaccaactgagctaag 41029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 11759068 - 11759022
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtttacgga 397  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||    
T  11759068 ttgcatatattatacattatccttatcaactgagctaagtttacgga 11759022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 388
Target Start/End: Complemental strand, 29652263 - 29652224
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaa 388  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  29652263 ccttgcatatattatgcattgttcttatcaactgagctaa 29652224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 44019594 - 44019547
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  44019594 ccttgcatatattatgcattgttcttaccaactgagctaagttcacgg 44019547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 2060578 - 2060540
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  2060578 ttgcatatattatgcattgttcttatcaactgagctaag 2060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 9055421 - 9055463
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| |||||||| || |||||||||||||||||||    
T  9055421 ccttgcatatattatacattatttttatcaactgagctaagtt 9055463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 31888071 - 31888019
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacggaaact 401  Q
    ||||||||||| ||| |||||| |||| ||||||||||||||| |||| ||||    
T  31888071 ccttgcatatattatccattgtccttaccaactgagctaagttcacgggaact 31888019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 12276249 - 12276294
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  12276249 ttgcatatattatgcattgttcttaccaactgagctaagtttacgg 12276294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 26832955 - 26833002
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||||| |||||||||||||||| ||||||| || ||||||||    
T  26832955 ccttgcatatattatacattgttcttataaactgagttacgtttacgg 26833002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 32149183 - 32149138
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttac 394  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  32149183 ccttgcatatattatgcattgttcttaccaactgagctaagcttac 32149138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 2747429 - 2747401
Alignment:
Q  372 cttatcaactgagctaagtttacggaaac 400  Q
    |||||||||||||||||||||||||||||    
T  2747429 cttatcaactgagctaagtttacggaaac 2747401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 18256928 - 18256888
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  18256928 ccttgcatatattatgcattgtccttatcaactgagctaag 18256888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 33824926 - 33824886
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||| ||||||||||||||||||    
T  33824926 ccttgcatatattatgcattgtccttatcaactgagctaag 33824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 35492836 - 35492791
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  35492836 ttgcatatattatgcattgttcttaccaactgagctaagtttacgg 35492791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 4216415 - 4216457
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||    
T  4216415 ccttgcatatattatgcattgtccttatcaactgagctaagtt 4216457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 21549083 - 21549037
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacg 395  Q
    ||||||||||| |||||||||| | |||||||||||||||| |||||    
T  21549083 ccttgcatatattatacattgtccatatcaactgagctaagcttacg 21549037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 38894082 - 38894040
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||  |||||||||||| ||||||||||||||||||    
T  38894082 ccttgcatattttatacattgttcatatcaactgagctaagtt 38894040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 45096071 - 45096029
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||    
T  45096071 ccttgcatatattatgcattgtccttatcaactgagctaagtt 45096029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 19599156 - 19599201
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||| |||| ||||| |||| ||||||||||||||||||||    
T  19599156 ttgcatatattatatattgtccttaccaactgagctaagtttacgg 19599201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 6901470 - 6901510
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||||| || |||||||||||||    
T  6901470 ccttgcatatattatacattgttcctaccaactgagctaag 6901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 13800712 - 13800672
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| ||||||||||| |||||||||||||    
T  13800712 ccttgcatatattatgcattgttcttaccaactgagctaag 13800672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 47099051 - 47099091
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||| ||||||||||||||||||||    
T  47099051 ccttgcatatattatgcattattcttatcaactgagctaag 47099091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 12893260 - 12893300
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  12893260 ccttacatatattatacattgttcttatcaactgagctaag 12893300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 351 - 391
Target Start/End: Original strand, 37670499 - 37670539
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  37670499 ttgcatatattatacattgttcttaccaactgagctaagtt 37670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 4589734 - 4589779
Alignment:
Q  350 cttgcatatagtatacattgttcttatcaactgagctaagtttacg 395  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||    
T  4589734 cttgcatatattatacattgttcatgtcaactgagctaaatttacg 4589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 4693127 - 4693074
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacggaaactg 402  Q
    |||||||| || |||| ||||| ||||||||||||| |||||| ||||||||||    
T  4693127 ccttgcatgtattatatattgtccttatcaactgagttaagttcacggaaactg 4693074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 13835713 - 13835673
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtt 391  Q
    ||||| ||| |||||||||||||||||||||||| ||||||    
T  13835713 ttgcacatattatacattgttcttatcaactgagttaagtt 13835673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 17280964 - 17281004
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||| ||| ||||||||||||||||    
T  17280964 ccttgcatatattatacattattcatatcaactgagctaag 17281004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 32458347 - 32458307
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| ||| |||||||||||||||||||| ||||    
T  32458347 ccttgcatatattatgcattgttcttatcaactgagttaag 32458307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 45987 - 45941
Alignment:
Q  350 cttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    |||||||||| |||||||| |||||| ||||||||||||||| ||||    
T  45987 cttgcatatattatacattattcttaccaactgagctaagttcacgg 45941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 1669598 - 1669643
Alignment:
Q  351 ttgcatatagtatacattgttcttatcaactgagctaagtttacgg 396  Q
    ||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  1669598 ttgcatatattatgcattgttcttaccaactgagctaagttcacgg 1669643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 18147571 - 18147611
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||| ||||||||||||| ||||    
T  18147571 ccttgcatatattatacattgtccttatcaactgagttaag 18147611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 29962403 - 29962363
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||||  ||||||||||||||||    
T  29962403 ccttgcatatattatacattgtttctatcaactgagctaag 29962363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 30012395 - 30012435
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaag 389  Q
    ||||||||||| |||||||||||  ||||||||||||||||    
T  30012395 ccttgcatatattatacattgtttctatcaactgagctaag 30012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 36795853 - 36795813
Alignment:
Q  355 atatagtatacattgttcttatcaactgagctaagtttacg 395  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  36795853 atatagtatatattgtctttatcaactgagctaagtttacg 36795813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 8732 - 8684
Alignment:
Q  349 ccttgcatatagtatacattgttcttatcaactgagctaagtttacgga 397  Q
    ||||||||||| |||| ||||| ||||| || |||||||||||||||||    
T  8732 ccttgcatatattatatattgtccttattaattgagctaagtttacgga 8684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University