View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_high_40 (Length: 359)

Name: NF5746_high_40
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_high_40
NF5746_high_40
[»] chr3 (5 HSPs)
chr3 (10-340)||(55380291-55380621)
chr3 (216-302)||(25184723-25184809)
chr3 (256-299)||(42428432-42428474)
chr3 (249-295)||(35390490-35390536)
chr3 (209-290)||(46258106-46258186)
[»] chr8 (2 HSPs)
chr8 (216-302)||(36241188-36241274)
chr8 (164-285)||(39367583-39367707)
[»] chr7 (2 HSPs)
chr7 (216-302)||(17165968-17166054)
chr7 (252-288)||(29250494-29250530)
[»] chr2 (2 HSPs)
chr2 (216-290)||(39814524-39814598)
chr2 (185-290)||(12987462-12987568)
[»] chr1 (5 HSPs)
chr1 (216-290)||(5721844-5721918)
chr1 (216-302)||(11359441-11359527)
chr1 (183-290)||(52975690-52975799)
chr1 (250-300)||(35764138-35764188)
chr1 (252-288)||(1280528-1280564)
[»] chr6 (2 HSPs)
chr6 (236-300)||(832044-832108)
chr6 (218-290)||(10857322-10857394)
[»] chr4 (5 HSPs)
chr4 (180-300)||(11840829-11840951)
chr4 (216-300)||(25542408-25542492)
chr4 (210-288)||(35612-35690)
chr4 (231-288)||(40868870-40868928)
chr4 (255-299)||(48879608-48879652)
[»] chr5 (4 HSPs)
chr5 (216-302)||(18691028-18691114)
chr5 (216-302)||(33215184-33215270)
chr5 (216-302)||(41108969-41109055)
chr5 (243-287)||(22726489-22726534)
[»] scaffold0245 (1 HSPs)
scaffold0245 (252-288)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (252-288)||(6536-6572)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 55380621 - 55380291
Alignment:
Q  10 ataattctatatgtagtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaatcgtttaaaaagttttgtatatcatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  55380621 ataattctatatgtagtatagttcattggtttttcaagacatatttatatgttaagttctggttttgctgtgaattgtttaaaaagttttgtacatcatc 55380522  T
Q  110 gttattatgttagtaataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55380521 gttattatgttagtaataggtagttcattttcttattattaattgttgtgtgtagtaactgctatgttactgctgtaggtagtcagaattatacataaac 55380422  T
Q  210 tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttctatggcat 309  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55380421 tgaaagggaaaaaggagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtttgttagttttctatggcat 55380322  T
Q  310 cagttttgtttttctgctgattaatgtaacc 340  Q
    |||||||||||||||||||||||||||||||    
T  55380321 cagttttgtttttctgctgattaatgtaacc 55380291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 25184723 - 25184809
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  25184723 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 25184809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 42428432 - 42428474
Alignment:
Q  256 ttgggagagattaggctctctaattcctagaggtttgttagttt 299  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagagg-ttgttagttt 42428474  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 35390490 - 35390536
Alignment:
Q  249 ggttggtttgggagagattaggctctctaattcctagaggtttgtta 295  Q
    ||||||||||||||||| |||||||||||| ||||| ||||| ||||    
T  35390490 ggttggtttgggagagactaggctctctaactcctaaaggttggtta 35390536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 46258186 - 46258106
Alignment:
Q  209 ctgaaagggaaaagggagggcatt-agttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 290  Q
    ||||||||||||||||||||||||  ||| |||||| | |||||||| |||  ||||| |||||||||||||| |||||||||    
T  46258186 ctgaaagggaaaagggagggcattcggttgttttatgt-ttggttgg-ttgtaagagactaggctctctaatttctagaggtt 46258106  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 36241274 - 36241188
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  36241274 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 36241188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 285
Target Start/End: Original strand, 39367583 - 39367707
Alignment:
Q  164 gtaactgctatgttactgctgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggtt-ggtttggg 260  Q
    ||||||||| ||| || ||| |||| ||||| ||||||| ||| |  |||||||||||||||||||| | ||| | |||| |||||||||| ||||| ||    
T  39367583 gtaactgctttgtaaccgctttaggaagtcataattataaatatatgctgaaagggaaaagggaggggactaggtgttttgtatgttggtttggttttgg 39367682  T
Q  261 agagattaggctctctaattcctag 285  Q
    |||||||||||||| ||||||||||    
T  39367683 agagattaggctctataattcctag 39367707  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 17166054 - 17165968
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  17166054 ggaaaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 17165968  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
Q  252 tggtttgggagagattaggctctctaattcctagagg 288  Q
    |||||||||||||| |||||||||| |||||||||||    
T  29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 39814524 - 39814598
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 290  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  39814524 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 39814598  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 12987568 - 12987462
Alignment:
Q  185 taggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcc 282  Q
    |||||||||||||||||| ||| |  |||| |||||||  || ||||||| | |||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  12987568 taggtagtcagaattataaatatattctgatagggaaagagg-gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcc 12987470  T
Q  283 tagaggtt 290  Q
    ||||||||    
T  12987469 tagaggtt 12987462  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 5721844 - 5721918
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 290  Q
    ||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  5721844 ggaaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggtt 5721918  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 11359527 - 11359441
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  11359527 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 11359441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 52975799 - 52975690
Alignment:
Q  183 tgtaggtagtcagaattatacataaa--ctgaaagggaaaagggagggcattag-ttattttatatgtt-ggttggtttgggagagattaggctctctaa 278  Q
    |||||| ||| ||||| ||| |||||  |||||||||||||||||||||||| | ||||||| |||||| |||| ||| |||||||| ||||||||||||    
T  52975799 tgtaggaagttagaataataaataaaggctgaaagggaaaagggagggcattcggttatttt-tatgtttggttagtt-gggagagactaggctctctaa 52975702  T
Q  279 ttcctagaggtt 290  Q
    ||||||||||||    
T  52975701 ttcctagaggtt 52975690  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 35764138 - 35764188
Alignment:
Q  250 gttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 300  Q
    |||||||||||||||| ||| |||| ||||||||| |||||||||||||||    
T  35764138 gttggtttgggagagactagactctataattcctaaaggtttgttagtttt 35764188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
Q  252 tggtttgggagagattaggctctctaattcctagagg 288  Q
    |||||||||||||| |||||||||| |||||||||||    
T  1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 832044 - 832108
Alignment:
Q  236 tattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 300  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  832044 tattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagtttt 832108  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 10857394 - 10857322
Alignment:
Q  218 aaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtt 290  Q
    |||||||||||||||   |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10857394 aaaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggtt 10857322  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 11840829 - 11840951
Alignment:
Q  180 tgctgtaggtagtcagaattatacataaac--tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctcta 277  Q
    |||||||||||||| |||||||| ||| |   |||||| |||||||||||||| | | |||||| ||| | | ||||||||||||||| |||| ||||||    
T  11840829 tgctgtaggtagtctgaattataaatataggttgaaagagaaaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctcta 11840928  T
Q  278 attcctagaggtttgttagtttt 300  Q
    |||||||||||||||||| ||||    
T  11840929 attcctagaggtttgttaatttt 11840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 25542492 - 25542408
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagtttt 300  Q
    ||||||||||||||||| | |||||| ||||| |||||||||||||| || |||||||||||||| ||||||||| |||| ||||    
T  25542492 ggaaaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgctagaggttggttactttt 25542408  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 35690 - 35612
Alignment:
Q  210 tgaaagggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagagg 288  Q
    ||||||||||||||||| || |||| |||||| || |||||||||||||||| ||| ||  | ||||||||||||||||    
T  35690 tgaaagggaaaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg 35612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 40868870 - 40868928
Alignment:
Q  231 ttagttattttatatgttggtt-ggtttgggagagattaggctctctaattcctagagg 288  Q
    ||||||||||| |||||| ||| |||||| |||||| ||||||||||||||||||||||    
T  40868870 ttagttattttttatgttagtttggtttgagagagaataggctctctaattcctagagg 40868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 48879652 - 48879608
Alignment:
Q  255 tttgggagagattaggctctctaattcctagaggtttgttagttt 299  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||||    
T  48879652 tttgggagagactaggctctctaagtcctagaggtttgtttgttt 48879608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 18691028 - 18691114
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  18691028 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 18691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 302
Target Start/End: Complemental strand, 33215270 - 33215184
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||||||||||||||| | || ||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||    
T  33215270 ggaaaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttct 33215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 41108969 - 41109055
Alignment:
Q  216 ggaaaagggagggcattagttattttatatgttggttggtttgggagagattaggctctctaattcctagaggtttgttagttttct 302  Q
    ||||| |||| |||||| | |||||| ||||| ||||||||||||||||| | |||||||||||||||||||||| |||| ||||||    
T  41108969 ggaaaggggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttct 41109055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 22726489 - 22726534
Alignment:
Q  243 tatgttggtt-ggtttgggagagattaggctctctaattcctagag 287  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    
T  22726489 tatgttggtttggtttgggagagactaggctctctaattcctagag 22726534  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 6206 - 6242
Alignment:
Q  252 tggtttgggagagattaggctctctaattcctagagg 288  Q
    |||||||||||||| |||||||||| |||||||||||    
T  6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 6536 - 6572
Alignment:
Q  252 tggtttgggagagattaggctctctaattcctagagg 288  Q
    |||||||||||||| |||||||||| |||||||||||    
T  6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

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