View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5746_high_43 (Length: 353)

Name: NF5746_high_43
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5746_high_43
NF5746_high_43
[»] chr3 (32 HSPs)
chr3 (20-315)||(10338721-10339017)
chr3 (2-315)||(10300904-10301211)
chr3 (37-245)||(53194521-53194727)
chr3 (49-238)||(48083239-48083427)
chr3 (125-245)||(14745109-14745229)
chr3 (181-245)||(26886416-26886480)
chr3 (173-245)||(27841618-27841690)
chr3 (173-245)||(35371043-35371115)
chr3 (173-245)||(38242424-38242496)
chr3 (173-244)||(34819194-34819265)
chr3 (154-245)||(42684992-42685083)
chr3 (37-245)||(44602953-44603158)
chr3 (154-245)||(49379817-49379909)
chr3 (178-245)||(3208625-3208692)
chr3 (178-228)||(3455550-3455600)
chr3 (156-245)||(7270441-7270530)
chr3 (173-234)||(10732048-10732109)
chr3 (37-141)||(10301831-10301934)
chr3 (154-234)||(10731000-10731080)
chr3 (133-220)||(11224776-11224863)
chr3 (154-243)||(13621035-13621125)
chr3 (172-234)||(53614192-53614254)
chr3 (157-245)||(28909516-28909604)
chr3 (157-245)||(53420436-53420524)
chr3 (97-179)||(54110258-54110340)
chr3 (156-245)||(40244303-40244392)
chr3 (195-237)||(46368965-46369007)
chr3 (111-238)||(20288140-20288267)
chr3 (193-234)||(41264572-41264613)
chr3 (156-204)||(26887506-26887554)
chr3 (156-203)||(53612988-53613035)
chr3 (152-234)||(38241019-38241100)
[»] chr8 (41 HSPs)
chr8 (37-238)||(10669361-10669561)
chr8 (38-245)||(24192572-24192778)
chr8 (51-245)||(31845704-31845896)
chr8 (73-245)||(20180583-20180755)
chr8 (73-245)||(43202131-43202303)
chr8 (37-179)||(39174702-39174843)
chr8 (48-234)||(42362671-42362856)
chr8 (173-245)||(32695182-32695254)
chr8 (173-245)||(32798440-32798512)
chr8 (37-141)||(10667969-10668072)
chr8 (170-238)||(9854795-9854863)
chr8 (155-243)||(17455164-17455252)
chr8 (156-224)||(42872120-42872188)
chr8 (156-228)||(42877736-42877808)
chr8 (72-179)||(35799485-35799592)
chr8 (186-245)||(40437505-40437564)
chr8 (31-179)||(32552290-32552437)
chr8 (173-245)||(42098699-42098771)
chr8 (37-179)||(32553882-32554023)
chr8 (38-123)||(7844712-7844796)
chr8 (193-245)||(4810621-4810673)
chr8 (157-245)||(14840808-14840896)
chr8 (154-234)||(42100027-42100107)
chr8 (173-245)||(45281097-45281169)
chr8 (155-238)||(6397899-6397982)
chr8 (154-245)||(8571525-8571616)
chr8 (72-179)||(39173150-39173257)
chr8 (178-228)||(42878756-42878806)
chr8 (51-179)||(38697882-38698007)
chr8 (138-245)||(24305142-24305249)
chr8 (171-234)||(38696441-38696504)
chr8 (38-179)||(35800954-35801094)
chr8 (173-245)||(22620019-22620091)
chr8 (38-142)||(24191378-24191481)
chr8 (173-245)||(42870950-42871022)
chr8 (186-245)||(13117541-13117600)
chr8 (162-245)||(35944029-35944112)
chr8 (157-245)||(37400907-37400987)
chr8 (156-245)||(32693947-32694036)
chr8 (173-238)||(44076277-44076342)
chr8 (260-315)||(10669281-10669337)
[»] chr1 (44 HSPs)
chr1 (37-234)||(3617417-3617613)
chr1 (37-245)||(9226124-9226331)
chr1 (51-245)||(48527548-48527741)
chr1 (51-245)||(26286426-26286618)
chr1 (73-245)||(5612994-5613166)
chr1 (170-245)||(13147325-13147400)
chr1 (37-245)||(27556270-27556475)
chr1 (169-245)||(52078053-52078129)
chr1 (171-245)||(26802073-26802147)
chr1 (156-245)||(12665909-12665997)
chr1 (153-238)||(44999378-44999463)
chr1 (154-245)||(15072699-15072790)
chr1 (154-228)||(48096958-48097032)
chr1 (37-238)||(6049341-6049540)
chr1 (154-223)||(15746697-15746766)
chr1 (129-229)||(9482547-9482646)
chr1 (173-244)||(16965035-16965106)
chr1 (150-238)||(10722292-10722380)
chr1 (154-245)||(51445705-51445797)
chr1 (170-245)||(14478398-14478473)
chr1 (150-237)||(35943364-35943451)
chr1 (155-245)||(13894731-13894820)
chr1 (171-245)||(24517526-24517600)
chr1 (51-245)||(28050335-28050528)
chr1 (155-213)||(41873912-41873970)
chr1 (156-245)||(18821648-18821737)
chr1 (173-237)||(45584924-45584988)
chr1 (185-245)||(49801765-49801825)
chr1 (154-245)||(46110397-46110488)
chr1 (171-245)||(40109491-40109565)
chr1 (173-237)||(9485221-9485285)
chr1 (170-238)||(41872708-41872776)
chr1 (154-213)||(23091468-23091527)
chr1 (37-131)||(3615247-3615340)
chr1 (156-238)||(10711906-10711988)
chr1 (173-219)||(34350248-34350294)
chr1 (151-237)||(46318535-46318620)
chr1 (25-139)||(52076519-52076632)
chr1 (51-136)||(5611740-5611824)
chr1 (155-211)||(14470973-14471029)
chr1 (173-245)||(15232888-15232960)
chr1 (154-234)||(16963949-16964029)
chr1 (153-245)||(46467261-46467352)
chr1 (162-245)||(15979016-15979099)
[»] chr7 (39 HSPs)
chr7 (37-234)||(16755871-16756067)
chr7 (49-245)||(44372741-44372936)
chr7 (49-245)||(44381597-44381792)
chr7 (154-245)||(46201247-46201338)
chr7 (99-231)||(15992196-15992328)
chr7 (110-245)||(43441418-43441553)
chr7 (125-245)||(35295786-35295906)
chr7 (156-245)||(669298-669386)
chr7 (173-238)||(43460738-43460803)
chr7 (173-245)||(32255126-32255198)
chr7 (32-167)||(9081388-9081522)
chr7 (38-136)||(3332175-3332272)
chr7 (156-245)||(2414863-2414952)
chr7 (181-245)||(22537703-22537767)
chr7 (173-245)||(40811456-40811528)
chr7 (172-234)||(13564158-13564220)
chr7 (173-234)||(11502340-11502401)
chr7 (154-245)||(39981432-39981524)
chr7 (154-245)||(41328334-41328426)
chr7 (177-234)||(22336119-22336176)
chr7 (155-213)||(22115105-22115163)
chr7 (151-205)||(33779036-33779090)
chr7 (155-213)||(40509675-40509733)
chr7 (154-203)||(11501295-11501344)
chr7 (157-245)||(47454455-47454543)
chr7 (156-206)||(32256344-32256394)
chr7 (154-222)||(47060408-47060476)
chr7 (154-213)||(3413648-3413707)
chr7 (171-238)||(30334558-30334624)
chr7 (170-245)||(40508510-40508585)
chr7 (156-234)||(22337292-22337370)
chr7 (72-138)||(29589286-29589352)
chr7 (37-131)||(44376711-44376804)
chr7 (37-131)||(44385578-44385671)
chr7 (170-245)||(47059241-47059318)
chr7 (157-234)||(44554688-44554764)
chr7 (155-203)||(13562938-13562986)
chr7 (200-240)||(46835838-46835878)
chr7 (72-116)||(48312691-48312735)
[»] chr5 (27 HSPs)
chr5 (37-245)||(9220366-9220576)
chr5 (51-245)||(1102632-1102825)
chr5 (73-238)||(4127169-4127334)
chr5 (73-238)||(10735798-10735963)
chr5 (173-245)||(30859079-30859151)
chr5 (173-245)||(30910878-30910950)
chr5 (173-245)||(39603990-39604062)
chr5 (177-238)||(11262532-11262593)
chr5 (156-228)||(1010291-1010363)
chr5 (156-228)||(8521372-8521444)
chr5 (173-245)||(22047869-22047941)
chr5 (173-245)||(27705224-27705296)
chr5 (178-228)||(1009325-1009375)
chr5 (151-213)||(33173901-33173963)
chr5 (154-245)||(325095-325186)
chr5 (155-238)||(22308715-22308798)
chr5 (155-238)||(36898897-36898980)
chr5 (156-234)||(35081357-35081435)
chr5 (155-233)||(30912084-30912162)
chr5 (193-242)||(13520711-13520760)
chr5 (178-232)||(17420342-17420395)
chr5 (171-245)||(40058148-40058222)
chr5 (171-224)||(324172-324225)
chr5 (99-148)||(24316192-24316241)
chr5 (51-224)||(41144451-41144620)
chr5 (173-238)||(15548374-15548443)
chr5 (156-204)||(30857917-30857965)
[»] chr4 (43 HSPs)
chr4 (37-245)||(44498460-44498668)
chr4 (72-245)||(56085381-56085554)
chr4 (51-245)||(26629805-26629997)
chr4 (37-238)||(4871494-4871694)
chr4 (37-237)||(19750211-19750409)
chr4 (37-237)||(19789397-19789595)
chr4 (51-245)||(1519825-1520017)
chr4 (73-245)||(36845444-36845617)
chr4 (173-245)||(2312389-2312461)
chr4 (173-245)||(27850846-27850918)
chr4 (37-245)||(45535046-45535251)
chr4 (154-245)||(13165611-13165702)
chr4 (173-245)||(52240013-52240085)
chr4 (174-244)||(15449984-15450054)
chr4 (154-228)||(40723343-40723417)
chr4 (173-238)||(11968647-11968712)
chr4 (173-245)||(7707725-7707797)
chr4 (37-245)||(23103918-23104123)
chr4 (37-123)||(4872262-4872347)
chr4 (173-245)||(1794548-1794620)
chr4 (154-245)||(26496218-26496310)
chr4 (169-245)||(49896493-49896569)
chr4 (125-245)||(52138702-52138824)
chr4 (156-223)||(6348272-6348339)
chr4 (178-245)||(28590813-28590880)
chr4 (133-235)||(22069330-22069432)
chr4 (173-238)||(42810119-42810184)
chr4 (157-213)||(4714139-4714195)
chr4 (157-245)||(56157405-56157493)
chr4 (171-245)||(41349437-41349511)
chr4 (173-245)||(6349457-6349532)
chr4 (156-245)||(53432180-53432269)
chr4 (154-237)||(7053292-7053376)
chr4 (154-213)||(13166710-13166769)
chr4 (154-213)||(52963684-52963743)
chr4 (157-234)||(8682768-8682845)
chr4 (125-214)||(36243606-36243695)
chr4 (156-213)||(53435694-53435751)
chr4 (179-234)||(34326868-34326923)
chr4 (31-142)||(44499996-44500106)
chr4 (155-233)||(7708710-7708788)
chr4 (193-234)||(23202002-23202043)
chr4 (156-204)||(40792866-40792914)
[»] chr6 (17 HSPs)
chr6 (156-245)||(11967334-11967423)
chr6 (173-245)||(7311633-7311705)
chr6 (154-245)||(12669839-12669930)
chr6 (173-245)||(17837752-17837824)
chr6 (181-245)||(18346658-18346722)
chr6 (154-245)||(11722901-11722993)
chr6 (173-245)||(29381638-29381710)
chr6 (174-245)||(5187530-5187601)
chr6 (48-141)||(18242323-18242415)
chr6 (188-245)||(23392365-23392422)
chr6 (152-206)||(7310389-7310443)
chr6 (156-234)||(23397275-23397353)
chr6 (99-136)||(18240461-18240498)
chr6 (154-211)||(32506969-32507026)
chr6 (99-148)||(21035711-21035760)
chr6 (156-196)||(5186685-5186725)
chr6 (51-119)||(30231492-30231559)
[»] scaffold0011 (1 HSPs)
scaffold0011 (156-238)||(127551-127633)
[»] scaffold0077 (1 HSPs)
scaffold0077 (173-245)||(54092-54164)
[»] scaffold0118 (1 HSPs)
scaffold0118 (173-245)||(43482-43554)
[»] chr2 (31 HSPs)
chr2 (173-245)||(42641769-42641841)
chr2 (155-238)||(43033198-43033281)
chr2 (155-245)||(30748596-30748686)
chr2 (133-245)||(34464063-34464175)
chr2 (150-245)||(34467618-34467713)
chr2 (37-179)||(23233671-23233812)
chr2 (176-245)||(8320895-8320964)
chr2 (173-237)||(11317284-11317348)
chr2 (173-245)||(29219522-29219594)
chr2 (173-245)||(29332821-29332893)
chr2 (173-238)||(32469285-32469350)
chr2 (173-245)||(18616913-18616985)
chr2 (155-238)||(30749241-30749323)
chr2 (170-245)||(34513462-34513537)
chr2 (154-245)||(4920967-4921059)
chr2 (173-245)||(6030378-6030450)
chr2 (153-221)||(16295150-16295218)
chr2 (169-224)||(43034400-43034455)
chr2 (196-245)||(35903665-35903714)
chr2 (170-245)||(28611162-28611236)
chr2 (193-234)||(1085307-1085348)
chr2 (172-245)||(34512946-34513019)
chr2 (173-245)||(11547796-11547867)
chr2 (173-245)||(17459390-17459462)
chr2 (153-215)||(12359618-12359680)
chr2 (37-123)||(23231540-23231625)
chr2 (162-211)||(26205134-26205183)
chr2 (162-222)||(7983630-7983690)
chr2 (152-224)||(11316046-11316118)
chr2 (156-204)||(17460635-17460683)
chr2 (59-119)||(25561694-25561753)
[»] scaffold0219 (1 HSPs)
scaffold0219 (156-245)||(8100-8188)
[»] scaffold0013 (1 HSPs)
scaffold0013 (154-245)||(32686-32779)
[»] scaffold2071 (1 HSPs)
scaffold2071 (162-245)||(590-673)
[»] scaffold0031 (2 HSPs)
scaffold0031 (156-222)||(124086-124152)
scaffold0031 (173-238)||(125146-125212)
[»] scaffold0034 (2 HSPs)
scaffold0034 (178-238)||(108654-108714)
scaffold0034 (157-234)||(109666-109743)
[»] scaffold0201 (1 HSPs)
scaffold0201 (155-213)||(21244-21302)
[»] scaffold0019 (1 HSPs)
scaffold0019 (154-211)||(63074-63131)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 315
Target Start/End: Original strand, 10338721 - 10339017
Alignment:
Q  20 tggtcttaaataaaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccct 119  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  10338721 tggtcttcaataaaag-ctaaaataattcaatggtcccttaattaattttttagttttcattttggtcccataaattttaaaatcatcattttggtccct 10338819  T
Q  120 caacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatat 219  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||||||| |||    
T  10338820 caacgtttgctcccttattcaaaaaagtctctgcctgttaactttaacctcagatgtctataatgaaccaaccttaagagtggtccaccatagatcctat 10338919  T
Q  220 taattattttaatttaaactgtttga--nnnnnnnnnnaaataggacggttagattttggagattcattgtatctaatagtgaatcatcaccaactaa 315  Q
    ||||||||||||||| ||||||||||            |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||    
T  10338920 taattattttaattttaactgtttgattttttttttttaaataggacggttagattttggaggtccattgtatctaatattgaatcatcaccaactaa 10339017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 10300904 - 10301211
Alignment:
Q  2 atattatctataaatcactggtcttaaataaaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaa 101  Q
    |||||||| |||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  10300904 atattatccataactcactagtcttcaataaaaggctaaattaattcaatggtcccttaactaatttttcagttttcattttggttccataaatcttaaa 10301003  T
Q  102 atcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtg 201  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||      || ||||||||||| |||||| ||||||||||||||||||||||||||    
T  10301004 atcatcaatctggtccctcaacgtttgctccgttattcaaaaaagt------ctattaactttaacctcaaatatctatggtgaaccaaccttaagagtg 10301097  T
Q  202 gtccaccatagatcatattaattattttaatttaaactgtttga-nnnnnnnnnnaaataggacggttagattttggagattcattgtatctaatagtga 300  Q
     ||||||||||||| |||||||||||||||||||||||||||||           ||||||||| ||||||||||| || | |||  ||||||||||||     
T  10301098 atccaccatagatcctattaattattttaatttaaactgtttgatttttttttttaaataggactgttagattttgaaggtccatcatatctaatagtg- 10301196  T
Q  301 atcatcaccaactaa 315  Q
    |||||||||||||||    
T  10301197 atcatcaccaactaa 10301211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 53194727 - 53194521
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||| ||||||||||| ||||||||    ||||||||||||||||||| || |||||||||||||| |||||||| ||||| |||||| |||||    
T  53194727 ctaaattaatccaatggtccctcaactaattacc-agttttcattttggttccataagttttaaaatcatcattttggtccttcaacttttgctttgtta 53194629  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    |||||||||||| ||| | |||||||||||| | |||| ||||||||  || || ||||| |||| ||||||||||||  |||||||||||||| |||||    
T  53194628 ttcaaaaaagtc-ctgaccgttaactttaactttaaatatctatggtagacaaatcttaaaagtgatccaccatagattctattaattattttattttaa 53194530  T
Q  237 actgtttga 245  Q
    || ||||||    
T  53194529 accgtttga 53194521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 48083239 - 48083427
Alignment:
Q  49 aatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtc 148  Q
    ||||||||||||||||||| |  ||||||||||||| | ||  || |||||||||||||| |||||||||| ||| ||||||| |||||||||    ||     
T  48083239 aatggtcccttaactaattctc-agttttcattttgatcccttaagttttaaaatcatcattttggtcccttaacctttgctccgttattcaatttggtt 48083337  T
Q  149 tctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
     ||||| ||||||||||||  ||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  48083338 actggcggttaactttaaccacaaatgtctatggtgcactaaccttaagagtggtctaccatagatcctattaattattttaatttaaac 48083427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 14745229 - 14745109
Alignment:
Q  125 tttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    ||||||| |||| |||||||||||  || | || |||||||||  ||||| ||| ||||| |||||||||||||||||| ||||||||||| ||||||||    
T  14745229 tttgctcagttagtcaaaaaagtccatgaccgtcaactttaaccccaaatatctgtggtggaccaaccttaagagtggttcaccatagatcctattaatt 14745130  T
Q  225 attttaatttaaactgtttga 245  Q
    |||||||||||||||||||||    
T  14745129 attttaatttaaactgtttga 14745109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 26886416 - 26886480
Alignment:
Q  181 ggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  26886416 ggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttga 26886480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 27841690 - 27841618
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  27841690 atgtttatggtggaccaaccttaagagtggtccaccatagatcctaataattattttaattttaactgtttga 27841618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 35371043 - 35371115
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  35371043 atgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactttttga 35371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 38242496 - 38242424
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||||    
T  38242496 atgtctatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttga 38242424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 34819265 - 34819194
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttg 244  Q
    |||||||| ||| | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34819265 atgtctatagtggatcaaccttaagagtggtccaccatagatcctattacttattttaatttaaactgtttg 34819194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 42684992 - 42685083
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||| | | |||||| | ||||||||||||| ||||||    
T  42684992 ctgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttga 42685083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 44603158 - 44602953
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||| |||||||||| ||||||||||  |||||| |||||||| ||| |||| ||||||| ||||||   |||||||||| ||||||| ||||    
T  44603158 ctaaattaattaaatggtccctcaactaattttc-agtttttattttggtcccataaatcttaaaataatcaatcgagtccctcaacttttgctccgtta 44603060  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    ||||||||  || ||| |  ||||||||||| | |||||||||  ||||| ||     ||   ||||| |||||||||| |||||||| |||||||||||    
T  44603059 ttcaaaaagatc-ctgaccattaactttaacttgaaatgtctaaagtgaaacacaaacaatgttggtctaccatagatcctattaatt-ttttaatttaa 44602962  T
Q  237 actgtttga 245  Q
    || ||||||    
T  44602961 accgtttga 44602953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 49379817 - 49379909
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| ||| || |||| | |||||||||||||||| ||||||||||| |||||||||||||||||    
T  49379817 ctgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaactgtttga 49379909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 3208625 - 3208692
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||    
T  3208625 tatggtggaccaaccttaagagtggtccaccataaatcctattaattattataatttaaaccgtttga 3208692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 3455600 - 3455550
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3455600 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 3455550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 7270441 - 7270530
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||| |||||| | |||| | || ||||||||||    
T  7270441 gttaactttaacctcaaatgtctgtagtggaccaaccttaagagtggtctaccatagatcttattaacttttttgactttaactgtttga 7270530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 10732109 - 10732048
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  10732109 atgtctatggtggaccaacctttagagcggtccaccatagatcctattaattattttaattt 10732048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 10301934 - 10301831
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||||||||||||||| |||||||||   | ||||||||||||| ||| || | |||||||||||||| |||||| ||||| ||||||| ||||    
T  10301934 ctaaattaattcaatggtccctcaactaatttcc-atttttcattttggtcccataagtcttaaaatcatcaatatggtccttcaacttttgctccgtta 10301836  T
Q  137 ttcaa 141  Q
     ||||    
T  10301835 gtcaa 10301831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 10731000 - 10731080
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||| | | |||||||| | |||||||    
T  10731000 ctgttaactttaacttcaaatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaattt 10731080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 11224863 - 11224776
Alignment:
Q  133 gttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatatt 220  Q
    |||||||||| ||  |||||| | ||||||||||   |||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  11224863 gttattcaaataaacctctggttattaactttaatcccaaatgttcatggtggaccaaccttaagagtggtccaccatagatcatatt 11224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 13621035 - 13621125
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgttt 243  Q
    |||||||||||||| || |||||||||||||| ||| || | || | |||||||||||||||| ||||||||||| |||||||||| ||||    
T  13621035 ctgttaactttaacctccaaatgtctatggtggaccgacttaaaaaatggtccaccatagatcctattaattattctaatttaaaccgttt 13621125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 53614254 - 53614192
Alignment:
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||||| | || ||||||||||||||||||||||||| || |||||||||||||||    
T  53614254 aatgtctatggtggatcatccttaagagtggtccaccatagatcctagtaattattttaattt 53614192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 28909604 - 28909516
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||  ||||| ||| ||||||||||  ||||||  |||||||||||||||| |||||||| ||||||||||||||| ||||    
T  28909604 ttaagtttaaccccaaatatctgtggtgaaccactcttaaggttggtccaccatagatcctattaatttttttaatttaaactggttga 28909516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 53420436 - 53420524
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||  ||||||||||||||| |||||| |||| |||| ||||||||||| | ||||||   ||||||||||||||||||||    
T  53420436 ttaagtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaaactttttaatttaaactgtttga 53420524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 54110340 - 54110258
Alignment:
Q  97 ttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    |||||||||||| ||| |||||||| | |||||||||||||||||||| ||   || |||||||||||||| | |||||||||    
T  54110340 ttaaaatcatcattttagtccctcatcttttgctctgttattcaaaaaggttcttgactgttaactttaactttaaatgtcta 54110258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 40244303 - 40244392
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||| ||||||||||| ||||| ||||| ||||||||| | |||| | |||||||| | ||||||| |||| |||||    
T  40244303 gttaactttaacttcaagtgtctatggtggaccaaacttaaaagtggtccatcgtagaccttattaattttgttaattttaactctttga 40244392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 46368965 - 46369007
Alignment:
Q  195 aagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  46368965 aagagtgttccaccatatatcatattaattattttaatttaaa 46369007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 20288267 - 20288140
Alignment:
Q  111 ttggtccctcaacgtttg-ctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaacctta-agagtggtccacc 208  Q
    |||||||||||| ||||| |||||||| ||||| || || ||| ||||||| ||||||  ||||||||||||||| |||||| ||| ||| |  ||||||    
T  20288267 ttggtccctcaa-gtttgtctctgttagtcaaataaatccctgactgttaagtttaactccaaatgtctatggtggaccaacattataga-tattccacc 20288170  T
Q  209 atagatcatattaattattttaatttaaac 238  Q
    ||||| | ||||||||  ||||||||||||    
T  20288169 atagaccttattaatttatttaatttaaac 20288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 41264613 - 41264572
Alignment:
Q  193 ttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  41264613 ttaagagtggtacaccatagatcctattaattattttaattt 41264572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 26887554 - 26887506
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtc 204  Q
    |||||||||||| |||||| ||||||||| ||||||||||| |||||||    
T  26887554 gttaactttaacttcaaatatctatggtgtaccaaccttaaaagtggtc 26887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 53612988 - 53613035
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggt 203  Q
    |||||||||||| ||||||||||||| ||||||||| |||| ||||||    
T  53612988 gttaactttaacttcaaatgtctatgatgaaccaactttaaaagtggt 53613035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 38241019 - 38241100
Alignment:
Q  152 ggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||| ||||||  ||||||||||||||||||||| ||||| | ||||||| | |||| | |||||||| | |||||||    
T  38241019 ggctgttaagtttaactccaaatgtctatggtgaaccaa-cttaaaaatggtccatcgtagagcttattaattttgttaattt 38241100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 10669561 - 10669361
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||| |||| |||||| ||||||||||  ||||||||||||||| ||| |||| ||||||||| || |||||| ||||||||||||||| ||||    
T  10669561 ctaaattaatccaatagtccctcaactaattttg-agttttcattttggtcccataaatcttaaaatcaacattttggtacctcaacgtttgctccgtta 10669463  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10669462 ttcaaaaaagtccttggctgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattttaatttaa 10669363  T
Q  237 ac 238  Q
    ||    
T  10669362 ac 10669361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 24192778 - 24192572
Alignment:
Q  38 taaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttat 137  Q
    |||||||||| |||||||||| || ||||||   ||||||| ||||||| ||| || | |||||||||||| ||||||| |||||| ||| ||| ||||     
T  24192778 taaattaattaaatggtccctcaattaatttcg-agttttcgttttggtcccataactcttaaaatcatcattttggtctctcaacttttactccgttaa 24192680  T
Q  138 tcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    ||||||| |||  || ||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  24192679 tcaaaaaggtccttgactgttaactttaaccctaaatgtctatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaattaaaa 24192580  T
Q  238 ctgtttga 245  Q
    | ||||||    
T  24192579 ccgtttga 24192572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 31845896 - 31845704
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||||||| ||| || || |||||||||||||| ||| || |  |||||||| || |||||||||||||||||||||| |||| ||||||| ||| |    
T  31845896 tggtcccttaagtaaattgtt-gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaaaaaggtccc 31845798  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |  | ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  31845797 taacggttaactttaaccccaaatgtctatggtgaaccaa-cttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttga 31845704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 20180755 - 20180583
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaa 172  Q
    ||||||||||||||  || || | ||||||| |||| ||||||||||| || ||||||| |||||||||||| |||  || || |||||||||||   ||    
T  20180755 gttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtccatgactattaactttaaccctaa 20180656  T
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||| ||| || ||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  20180655 atgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 20180583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 43202131 - 43202303
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaa 172  Q
    ||||||||||| || ||| || |  |||||||| || |||||||||||||||||||| | |||| ||||||| ||| ||| | ||||| ||||||  |||    
T  43202131 gttttcattttagtcccataactcgtaaaatcaacattttggtccctcaacgtttgcaccgttagtcaaaaaggtccctgaccgttaattttaaccccaa 43202230  T
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    || ||||| ||| | |||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  43202231 atatctatagtggatcaaccttaagagtggtccaccatagatcctattagttatttaaatttaaactgtttga 43202303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 39174843 - 39174702
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| |||||||| |  ||||||||||||||| | | || |||||||||||||| |||||||||||||| ||||||| ||||    
T  39174843 ctaaattaatcaaatggtccctcaactaattata-agttttcattttggtcctataagttttaaaatcatcattttggtccctcaacttttgctccgtta 39174745  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    |||||||| |||  | ||||||||||||||| | |||||||||    
T  39174744 ttcaaaaaggtccttcgctgttaactttaactttaaatgtcta 39174702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 42362856 - 42362671
Alignment:
Q  48 caatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagt 147  Q
    |||||||||| ||| |||||||| ||||||||||||||||| | || |   |||||||  | ||||||| |||||| ||||||| |||||||||||| ||    
T  42362856 caatggtcccctaattaatttttcagttttcattttggttctataactcgaaaaatcaatactttggtcactcaacttttgctccgttattcaaaaaggt 42362757  T
Q  148 ctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |   | |||||||||||||   || |||||||||||| |||||| ||||||||||| || |||||||| |||||||| |||||||||    
T  42362756 caacgactgttaactttaattccagatgtctatggtggaccaacattaagagtggttcatcatagatcctattaatt-ttttaattt 42362671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 32695254 - 32695182
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  32695254 atgtctatggtgaaccaatcttaagattggtccaccatagatcctattaattattttaatttaaaccgtttga 32695182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 32798512 - 32798440
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  32798512 atgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 32798440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 10667969 - 10668072
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| |||||||||   ||||||||||||||| ||| |||||||||||||| || |||||||||||||| ||||||||||||    
T  10667969 ctaaattaatcaaatggtccctcaactaatttcg-agttttcattttggtcccataaattttaaaatcagcattttggtccctcaacatttgctctgtta 10668067  T
Q  137 ttcaa 141  Q
     ||||    
T  10668068 gtcaa 10668072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 9854863 - 9854795
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| || ||||||||||    
T  9854863 caaatgtctatggtggaccaactttaagagtggtccaccatagatcctattaattcttctaatttaaac 9854795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 17455164 - 17455252
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgttt 243  Q
    ||||||||||||| |||||| |||||| |  ||||| ||||| |||||||||||||||||| |||||||||||||||||| ||| ||||    
T  17455164 tgttaactttaacttcaaatatctatgctagaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttt 17455252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 42872188 - 42872120
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||    
T  42872188 gttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaatt 42872120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 42877736 - 42877808
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 42877808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 35799485 - 35799592
Alignment:
Q  72 agttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtca 171  Q
    |||||||||||||||   | || | ||||||| |||| |||||||||||||| ||||||| ||||||||||||||||  | ||||||||||||||| | |    
T  35799485 agttttcattttggtcttataagtcttaaaattatcattttggtccctcaacttttgctccgttattcaaaaaagtccttcgctgttaactttaacttta 35799584  T
Q  172 aatgtcta 179  Q
    ||||||||    
T  35799585 aatgtcta 35799592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 40437564 - 40437505
Alignment:
Q  186 accaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  40437564 accaaccttaaaagtggtccaccgtagatcctattaattattttaatttaaactgtttga 40437505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 32552290 - 32552437
Alignment:
Q  31 aaaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgct 130  Q
    ||||| ||||||||||  |||||||||| ||||||||    ||||||||||||| | | | || | |||||||| ||| |||||||||||||| ||||||    
T  32552290 aaaaggctaaattaatctaatggtccctcaactaattacg-agttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgct 32552388  T
Q  131 ctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    | ||| |||||||| |||  | ||||||||||||||| | |||||||||    
T  32552389 ccgttgttcaaaaaggtccttcgctgttaactttaactttaaatgtcta 32552437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 42098699 - 42098771
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||| ||| ||||||    
T  42098699 atgtctttggtggaccaaccttaaaagtggtccaccatagatcctattaattactttaatttcaaccgtttga 42098771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 32554023 - 32553882
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| ||||||||    ||||||||||||| | | | || | |||||||| ||| |||||||||||||| ||||||| |||     
T  32554023 ctaaattaatcaaatggtccctcaactaattacg-agttttcattttgatcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgttg 32553925  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    |||||||| |||  | ||||||||||||||| | |||||||||    
T  32553924 ttcaaaaaggtcattcgctgttaactttaactttaaatgtcta 32553882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 7844712 - 7844796
Alignment:
Q  38 taaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaac 123  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||| ||| || | |||||||||||| ||||||||||||||    
T  7844712 taaattaatccaatggtcccttaactaattacc-agttttcattttggtcccataagtcttaaaatcatcattttggtccctcaac 7844796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 4810621 - 4810673
Alignment:
Q  193 ttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  4810621 ttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttga 4810673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 14840896 - 14840808
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||  ||||||||||||||| |||||| |||| |||| |||||||||| || |||||| | ||||||||||||| ||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttga 14840808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 234
Target Start/End: Complemental strand, 42100107 - 42100027
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||||| |||||||||| ||||| ||||||||||| ||||||||| | |||| | |||||||| | |||||||    
T  42100107 ctgttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaattttgttaattt 42100027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 45281169 - 45281097
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| |||| ||||||||||||||||||| |||||| ||| |||||||  ||||||||||||| ||||||    
T  45281169 atgtctacggtggaccaaccttaagagtggtctaccataaatcctattaatatttttaatttaaaccgtttga 45281097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 6397899 - 6397982
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||| ||||||  |||||  ||||||| |||||||||| | |||||||||||||||| | |||||||| |||||||||||||    
T  6397899 tgttaaatttaactccaaataactatggtaaaccaacctttacagtggtccaccatagaccttattaatttttttaatttaaac 6397982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 8571616 - 8571525
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||||||  ||||||||||||||| |||||| |||| | |||||||||||| | | ||||||   ||||||||||||||||||||    
T  8571616 ctgttaagtttaaccccaaatgtctatggtggaccaactttaaaaatggtccaccatataccttattaaactttttaatttaaactgtttga 8571525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 39173150 - 39173257
Alignment:
Q  72 agttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtca 171  Q
    ||||||||||||||| | | || | |||||||| ||| |||||||||||||| ||||||| ||| |||||||| |||  | || |||||||||||| | |    
T  39173150 agttttcattttggtcctataagtcttaaaatcgtcattttggtccctcaacttttgctccgttgttcaaaaaggtccttcgcagttaactttaacttta 39173249  T
Q  172 aatgtcta 179  Q
    ||||||||    
T  39173250 aatgtcta 39173257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 42878806 - 42878756
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  42878806 tatggtggaccaaccttaagtgtggtccaccatagatcctattaattattt 42878756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 38697882 - 38698007
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| ||| ||||||| || ||| ||||||||||||| || || |||||||| || |||||||||||    ||||||| |||| |||||||||  ||    
T  38697882 tggtcccctaagtaattttcta-tttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaaaaag--tc 38697978  T
Q  151 tggctgttaactttaacgtcaaatgtcta 179  Q
    || |||||||||||||| | |||||||||    
T  38697979 tgtctgttaactttaactttaaatgtcta 38698007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 24305142 - 24305249
Alignment:
Q  138 tcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    |||||||||||| ||  |||||||||||||   |||||||||||||| |||||| ||||||||| || | | |||||| |||||||| ||| || || ||    
T  24305142 tcaaaaaagtctttgattgttaactttaaccctaaatgtctatggtggaccaacattaagagtgatctatcttagatcctattaattttttaaacttcaa 24305241  T
Q  238 ctgtttga 245  Q
    || |||||    
T  24305242 ctatttga 24305249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 38696441 - 38696504
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||  ||||||| || ||||||    
T  38696441 aaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataattt 38696504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 35801094 - 35800954
Alignment:
Q  38 taaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttat 137  Q
    |||||||||  |||||||||| ||||||||    ||||||||||||||| | | || | |||||||| ||| ||| |||||||||| ||||||| ||| |    
T  35801094 taaattaatcaaatggtccctcaactaattacg-agttttcattttggtcctataagtcttaaaatcgtcattttagtccctcaacttttgctccgttgt 35800996  T
Q  138 tcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    |||||||  ||  | || |||||||||||| | |||||||||    
T  35800995 tcaaaaagatccttcgccgttaactttaactttaaatgtcta 35800954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 22620019 - 22620091
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||||||| ||| |||||||  |||||  ||||||||||||||| ||||| |||||||| ||||||    
T  22620019 atgtctaaggtgaactaactttaagagctgtccattatagatcatattaatcatttttatttaaaccgtttga 22620091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 24191378 - 24191481
Alignment:
Q  38 taaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttat 137  Q
    |||||||||  |||| ||||| |||||||||   ||||||| ||||||| ||| || | |||||||||||| ||||||| || ||| ||||||||||||     
T  24191378 taaattaatcaaatgatccctcaactaatttcg-agttttcgttttggtcccataactcttaaaatcatcattttggtctcttaacttttgctctgttac 24191476  T
Q  138 tcaaa 142  Q
    |||||    
T  24191477 tcaaa 24191481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 42870950 - 42871022
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||| ||| ||||| ||||||||||||||||| |||| | |||||| | || |||||||||| ||||||    
T  42870950 atgtctattgtggaccaatcttaagagtggtccaccgtagaccttattaaattttgtaatttaaaccgtttga 42871022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 13117600 - 13117541
Alignment:
Q  186 accaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| |||| ||||||||| |||||||| |||||||||||||||| | ||| ||||||    
T  13117600 accaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttga 13117541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 35944029 - 35944112
Alignment:
Q  162 tttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| | ||||||||| ||||||||||| |||   ||| ||||||||||||| |||||| | ||||| ||| ||||||||||    
T  35944029 tttaactttaaatgtctaaggtgaaccaactttataggtgatccaccatagatcttattaaatcttttatttttaactgtttga 35944112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 37400907 - 37400987
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||| |||||| ||||||||||||| ||        |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  37400907 ttaactttaacctcaaatatctatggtgaacccac--------tggtccaccatagatcctattaatttttttaatataaaccgtttga 37400987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 32693947 - 32694036
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| | |||||| |||| || ||||||||||| ||||| | | |||||| | |||||||| | ||||||| ||| ||||||    
T  32693947 gttaactttaactttaaatgtatatgatggaccaaccttaaaagtggcctatcatagaccttattaattttattaattttaaccgtttga 32694036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 44076342 - 44076277
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||| | |||| |||| | || ||||||||| ||| |||||||| |||||||||||||    
T  44076342 atgtctatggtggaacaacattaaaaatgatccaccataaatcttattaatttttttaatttaaac 44076277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 10669337 - 10669281
Alignment:
Q  260 aggacggttagattttg-gagattcattgtatctaatagtgaatcatcaccaactaa 315  Q
    ||||||||||||||||  ||| | |||||||||||||||| |||||| |||||||||    
T  10669337 aggacggttagatttttcgaggtccattgtatctaatagtaaatcatgaccaactaa 10669281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 3617613 - 3617417
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||| ||| ||| ||| |||||||| |  ||||||| ||||||| ||| || ||| |||||||||| |||||||||||||||||||||| ||||    
T  3617613 ctaaattaatccaacggttcctcaactaattctc-agttttcgttttggtcccataagtttaaaaatcatcattttggtccctcaacgtttgctccgtta 3617515  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  3617514 ttcaaaaaagtccttggctgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccactatagatcctattaattattttaattt 3617417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 9226331 - 9226124
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||||||||||||||| |||||||| |  ||||||||||||||| ||| ||||||||||||||||||||||| |||| ||| ||| ||| ||||    
T  9226331 ctaaattaattcaatggtccctcaactaattctc-agttttcattttggtcccataaattttaaaatcatcaatttggccccttaacttttactccgtta 9226233  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    |||||    |||  |||  ||||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9226232 ttcaatttggtcattggacgttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaatttaa 9226133  T
Q  237 actgtttga 245  Q
    | |||||||    
T  9226132 attgtttga 9226124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 48527548 - 48527741
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| ||| |||||| || |||| ||||||||| ||| || |  |||||| | || |||||||||| |||||||||| ||||| ||||||| ||| |    
T  48527548 tggtcccctaagtaatttgtt-gtttacattttggtcccataactcgtaaaattaacattttggtcccttaacgtttgctgtgttaatcaaaaaggtccc 48527646  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |   |||||||||||||  ||||||||||||||  |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  48527647 taattgttaactttaactccaaatgtctatggtcgaccaactttaagagtggtccaccatagatcttatcaattattttaatttaaactgtttga 48527741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 26286426 - 26286618
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| |||||||||| |  |||||||||||||| ||| || |  |||||||| ||  ||||||||||||||||||||| |||| ||||||| ||| |    
T  26286426 tggtcccctaactaatttgtc-gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaaaaaggtccc 26286524  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||||||  ||||||| ||||||| | | ||||| | |||| |||||||||||   |||||||||||||||||||||| ||||||    
T  26286525 tggctgttaactttaaccccaaatgtttatggtggatc-acctttaaagtgatccaccatagactctattaattattttaatttaaaccgtttga 26286618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 245
Target Start/End: Complemental strand, 5613166 - 5612994
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctg-gctgttaactttaacgtca 171  Q
    |||||||||||||| ||| || |  |||||||| ||  ||||||||||||||||||||| |||| ||||||| ||| ||| |||||||||||||||  ||    
T  5613166 gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacgtttgctccgttagtcaaaaaggtccctgcgctgttaactttaacccca 5613067  T
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||| ||||||| | || | |||| |||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  5613066 aatgtttatggtggatcacctttaa-agtgatccaccatagatcctattaattattttaatttaaaccgtttga 5612994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 13147400 - 13147325
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  13147400 caaatgtctatggtggaccaaccttaatagtggtccaccatagatcctattaattattttaatttaaattgtttga 13147325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 27556270 - 27556475
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||| ||||||||||||||||||| |  |||||| |||||||| ||| || | ||||||||||||||   |||||||||| ||||||| ||||    
T  27556270 ctaaattaattaaatggtcccttaactaattctc-agtttttattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctccgtta 27556368  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    ||||||||  || ||| | |||||||||||| | |||||||||  ||||| ||     ||   |||||||||||||||| |||||||| |||||||||||    
T  27556369 ttcaaaaagatc-ctgaccgttaactttaacttgaaatgtctaaagtgaaacacaaacaatgttggtccaccatagatcctattaatt-ttttaatttaa 27556466  T
Q  237 actgtttga 245  Q
    || ||||||    
T  27556467 acagtttga 27556475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 52078129 - 52078053
Alignment:
Q  169 tcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||| ||||||    
T  52078129 tcaaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttga 52078053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 26802073 - 26802147
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||    
T  26802073 aaatgtctaaggtgaaccaaccttaagagttgtccactatagatcatattaatcattttaatttaaaccgtttga 26802147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 12665909 - 12665997
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||| |||||||| | ||||||||||| ||||||    
T  12665909 gttaactttaacctcaaatgtttatggtgaaccatc-ttaagagtggtccaccatagatcttattaattttgttaatttaaaccgtttga 12665997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 44999463 - 44999378
Alignment:
Q  153 gctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||||||||| | |||||||||||||| ||||| | |||||||||| ||||||||||| ||||||||||||||| ||||||    
T  44999463 gctgttaactttaaccttaaatgtctatggtggaccaatcgtaagagtggttcaccatagatcttattaattattttaacttaaac 44999378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 15072790 - 15072699
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||   |||||||| | |||||||||| |||||||    
T  15072790 ctgttaactttaacctcaaatgtctatggtggaccaacctaaagagtggtccaccgtagactctattaattttcttaatttaaattgtttga 15072699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 48097032 - 48096958
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||| |||||| |||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  48097032 ctgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 48096958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 6049540 - 6049341
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| ||||||||    |||||| ||||||||  || || |  ||||||||||| |||||||||||||||||||||  ||||    
T  6049540 ctaaattaatcaaatggtccctcaactaattacc-agtttttattttggtctcataagtcctaaaatcatcattttggtccctcaacgtttgctacgtta 6049442  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    |||||    ||| ||  |  ||||||| |||  ||||||||||||||| ||||| || || ||||||||||| |||||| | ||||||||||||||||||    
T  6049441 ttcaatttggtc-ctaacaattaacttcaactccaaatgtctatggtggaccaatctaaatagtggtccaccgtagatcctgttaattattttaatttaa 6049343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 15746766 - 15746697
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaat 223  Q
    ||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  15746766 ctgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaat 15746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 9482547 - 9482646
Alignment:
Q  129 ctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    |||||||||||||| || ||| ||| |||||||||||||  ||||||||||  ||| |||||| ||||||||||| ||||||||||| ||||||||||||    
T  9482547 ctctgttattcaaataaatctatggttgttaactttaacc-caaatgtctacagtggaccaactttaagagtggttcaccatagatcttattaattattt 9482645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 16965106 - 16965035
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttg 244  Q
    |||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  16965106 atgtatatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttg 16965035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 10722380 - 10722292
Alignment:
Q  150 ctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||| |||||||||||| |||||| |||||| || |||||||| |||||||||||| |||||||  || ||||| |||||||||||||    
T  10722380 ctggccgttaactttaacctcaaatatctatgatggaccaacctaaagagtggtccatcatagattctactaatttttttaatttaaac 10722292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 51445705 - 51445797
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| | |||| |||| | |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  51445705 ctgttaactttaacccccaaatgtctatggtggatcaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 51445797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 14478398 - 14478473
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||| ||| || |||| | |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  14478398 caaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 14478473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 35943451 - 35943364
Alignment:
Q  150 ctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    ||||||||||| ||||||   |||||||||||||| |||||||||||||||| ||||||||||| | |||||| | ||||| ||||||    
T  35943451 ctggctgttaagtttaaccctaaatgtctatggtggaccaaccttaagagtgatccaccatagaccttattaaattttttattttaaa 35943364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 13894731 - 13894820
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||| ||  || |||||||||| ||||||| |||||| ||| |||||||||| | |||||||||||||||||||| ||||||    
T  13894731 tgttaactttaacctcgcatatctatggtga-ccaacctaaagagttgtctaccatagatcctgttaattattttaatttaaaccgtttga 13894820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 24517600 - 24517526
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||| ||||| |||||||| ||||||    
T  24517600 aaatgtctaaggtgaactaacattaagagttgtccactatagatcatattaatcatttttatttaaaccgtttga 24517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 28050335 - 28050528
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||||||| ||||| | | |||| ||||||||| ||| ||||| |||||||  || |||||||||      ||||||| |||| ||||||| |||      
T  28050335 tggtcccttaaataattatgt-gtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttagtcaaaaaggtcct 28050433  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||| ||||||||||||| ||||||||||   ||| ||||| |||||||||| ||||||||||||| |||| ||| | |||| || ||| ||||||    
T  28050434 tggatgttaactttaacctcaaatgtcttaagtggaccaatcttaagagtgttccaccatagatcctattgattttcttaactttaaccgtttga 28050528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 41873970 - 41873912
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  41873970 tgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccataga 41873912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 18821737 - 18821648
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||| |||||||||||||||| || |||||||||||||||| |||| ||||| |||||||| ||| || || ||| ||||||    
T  18821737 gttatctttaacttcaaatgtctatggtggactaaccttaagagtggtctaccaaagatcctattaattttttaaaatttaaccgtttga 18821648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 45584988 - 45584924
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||| |||||||||||||||| ||||    
T  45584988 atgtctatggtggcccaactttaagagtgctccaccatagatcctattaattattttaatataaa 45584924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 49801765 - 49801825
Alignment:
Q  185 aaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||||| ||  |||||||||||||||||||||| ||||||    
T  49801765 aaccaaccttaaaagtggtccaccataaattctattaattattttaatttaaaccgtttga 49801825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 46110397 - 46110488
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||   |||| ||||||||| ||||||||||||||||||||| | |||| | |||||||| | ||||||| ||| ||||||    
T  46110397 ctgttaactttaactctaaatatctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttga 46110488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 40109491 - 40109565
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| ||||||  ||| |||||||| |||||| ||||||||||||||| ||||| |||||||| ||||||    
T  40109491 aaatgtctaaggtgaagtaactttaagagttgtccactatagatcatattaatcatttttatttaaaccgtttga 40109565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 9485285 - 9485221
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    |||||||||||| | |||| |||||||||||  |||||| ||| |||||||||||||||||||||    
T  9485285 atgtctatggtggatcaactttaagagtggttaaccataaatcctattaattattttaatttaaa 9485221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 41872708 - 41872776
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||||||||||||||| ||||||| | || ||||||||| | |||||| | |||||||||||||    
T  41872708 caaatgtctatggtgaaccaatcttaagattagttcaccatagaccttattaaattttttaatttaaac 41872776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 23091468 - 23091527
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    ||||||| |||||  |||||||||||||||| |||||| |||| ||||||||||||||||    
T  23091468 ctgttaagtttaatctcaaatgtctatggtggaccaactttaaaagtggtccaccataga 23091527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 3615247 - 3615340
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctc 131  Q
    ||||||||||  |||||||||| |||||||| |  || |||| ||||||| ||| || | | |||||||||| ||||||||||||||||||||||    
T  3615247 ctaaattaatcaaatggtccctcaactaattctc-agatttcgttttggtcccataagtataaaaatcatcattttggtccctcaacgtttgctc 3615340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 10711906 - 10711988
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||| |||||| |||||| |  |||||||| |||||||||||| |||| ||  || ||||| |||||||||||||    
T  10711906 gttaactttaacctcaaatatctatgatagaccaacctaaagagtggtccatcataaattctactaatttttttaatttaaac 10711988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 34350248 - 34350294
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatat 219  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||    
T  34350248 atgtctatggtggatcaaccttaagagtggtccaccatagaccatat 34350294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 46318620 - 46318535
Alignment:
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    |||||||||| ||||||  |||||||||||| || |  | | || |||||||||||||||||||| |||||| ||||||||||||||    
T  46318620 tggctgttaagtttaaccccaaatgtctatgatggatta-cttttagagtggtccaccatagatcctattaaatattttaatttaaa 46318535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 52076519 - 52076632
Alignment:
Q  25 ttaaataaaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacg 124  Q
    ||||| ||||| ||||||||||  |||| ||||| |||||||| |  ||||||| ||||||| |||  | |   |||||||||| |||||||||||||||    
T  52076519 ttaaaaaaaagactaaattaatcaaatgatccctcaactaattctc-agttttcgttttggtcccattagtccaaaaatcatcattttggtccctcaacg 52076617  T
Q  125 tttgctctgttattc 139  Q
    ||||||| |||||||    
T  52076618 tttgctccgttattc 52076632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 5611740 - 5611824
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||| ||||||||||| || |||||||||||||| ||| || || |||||||| || |||||| ||||||| ||| ||||||||    
T  5611740 tggtcctttaactaatttgtt-gttttcattttggtcccataatttgtaaaatcaacattttggtgcctcaacttttactctgtta 5611824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 14470973 - 14471029
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccata 211  Q
    |||||| ||||||  |||| |||||| ||| ||||||||||||||||||||||||||    
T  14470973 tgttaagtttaaccccaaacgtctatagtggaccaaccttaagagtggtccaccata 14471029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 15232888 - 15232960
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||| ||| |||||| |||| ||||||||| |||||||| |||||||||||||||| | ||| ||||||    
T  15232888 atgtatatagtggaccaactttaaaagtggtccatcatagatcctattaattattttaatatcaaccgtttga 15232960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 16963949 - 16964029
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||||||   |||||| |||| || ||||||||||| ||||||||| |||||| | |||||||| | |||||||    
T  16963949 ctgttaactttaactctaaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaattt 16964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 46467261 - 46467352
Alignment:
Q  153 gctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||| ||||||   |||||||||||||| |||||| |||| |||| |||||| |||||  |||||| | ||||||||||||| ||||||    
T  46467261 gctgttaagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccgtagatgttattaaat-ttttaatttaaaccgtttga 46467352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 15979016 - 15979099
Alignment:
Q  162 tttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| | ||||||||| |||| | |||||||||  ||||||||||||||| ||||||| || |   ||||||||||||||||    
T  15979016 tttaacattaaatgtctaaggtggatcaaccttaaatgtggtccaccatagaccatattatttttgggaatttaaactgtttga 15979099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 16755871 - 16756067
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||| |||||||||| |||||||| |  ||||||  ||||||| ||| || ||| |||||||||| |||| ||||||||||||||||| ||||    
T  16755871 ctaaattaatttaatggtccctcaactaattctc-agtttttgttttggtcccataagtttaaaaatcatcattttgatccctcaacgtttgctccgtta 16755969  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||| |||||||||| ||||||||||||||||||    
T  16755970 ttcaaaaaagtctttggctgttaactttaacctcaaatgtctatggtgaaacaaccttaaaagttgtctaccatagatcctattaattattttaattt 16756067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 44372741 - 44372936
Alignment:
Q  49 aatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtc 148  Q
    |||||||||| |||||||||   |||||||||||||||  || || | ||||||| |||| ||||||||||| || ||||||| |||||||||||| |||    
T  44372741 aatggtccctcaactaatttcg-agttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtc 44372839  T
Q  149 tctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
      || || |||||||||||   |||||||||| ||| || ||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  44372840 catgactattaactttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 44372936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 245
Target Start/End: Original strand, 44381597 - 44381792
Alignment:
Q  49 aatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtc 148  Q
    |||||||||| |||||||||   |||||||||||||||  || || | ||||||| |||| ||||||||||| || ||||||| |||||||||||| |||    
T  44381597 aatggtccctcaactaatttcg-agttttcattttggtctcataactcttaaaattatcattttggtccctcgacttttgctccgttattcaaaaaggtc 44381695  T
Q  149 tctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
      || || |||||||||||   |||||||||| ||| || ||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  44381696 catgactattaactttaaccctaaatgtctatagtggactaacattaagagtggtccaccatagatcctattaattattttaattaaaaccgtttga 44381792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 46201247 - 46201338
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46201247 ctgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatataaactgtttga 46201338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 15992196 - 15992328
Alignment:
Q  99 aaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaaga 198  Q
    ||||||| || |||||||||| ||| ||||||||||| |||||||| |||| || |||||||||||||| |||||||||||||||| |||||||||||||    
T  15992196 aaaatcaacactttggtccctgaacttttgctctgttgttcaaaaaggtctttgactgttaactttaacctcaaatgtctatggtggaccaaccttaaga 15992295  T
Q  199 gtggtccaccatagatcatattaattattttaa 231  Q
    ||| |  |||| ||||| |||||||||||||||    
T  15992296 gtgatttaccaaagatcctattaattattttaa 15992328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 43441418 - 43441553
Alignment:
Q  110 tttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccacca 209  Q
    |||||||||||| ||||||||| |||| |||||||  ||  || | ||||||||||||   |||||||||||||| ||||||||||||||||||||||||    
T  43441418 tttggtccctcagcgtttgctccgttaatcaaaaagatccttgacggttaactttaaccctaaatgtctatggtgtaccaaccttaagagtggtccacca 43441517  T
Q  210 tagatcatattaattattttaatttaaactgtttga 245  Q
    ||  || |||||||||||||||| ||||||||||||    
T  43441518 taagtcctattaattattttaatgtaaactgtttga 43441553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 35295786 - 35295906
Alignment:
Q  125 tttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    ||||||| |||| ||||||||||   || | ||||||||||||  ||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  35295786 tttgctcagttaatcaaaaaagttcatgaccgttaactttaaccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaatt 35295885  T
Q  225 attttaatttaaactgtttga 245  Q
    |||||||||||||| ||||||    
T  35295886 attttaatttaaaccgtttga 35295906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 669386 - 669298
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||| |||||||| | ||||||||||| ||||||    
T  669386 gttaactttaacctcaaatgtctatggtggaccatc-ttaagagtggtccaccatagatcctattaattttgttaatttaaaccgtttga 669298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 43460803 - 43460738
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  43460803 atgtctatggtggaccaactttaagagtggtccaccatagatcctattaattattttaatttaaac 43460738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 32255126 - 32255198
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  32255126 atgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 32255198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 9081388 - 9081522
Alignment:
Q  32 aaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctc 131  Q
    |||| |||||||||| ||||||||||| |||||||||    |||||||||||||| ||| || |  |||||||||||||||| ||||||||| |||||||    
T  9081388 aaaggctaaattaatccaatggtccctcaactaatttccg-gttttcattttggtcccataagtcataaaatcatcaatttgctccctcaacttttgctc 9081486  T
Q  132 tgttattcaaaaaagtctctggctgttaactttaac 167  Q
      ||||||||||| ||| |||  |||||||||||||    
T  9081487 ctttattcaaaaaggtccctgattgttaactttaac 9081522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 3332272 - 3332175
Alignment:
Q  38 taaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||  |||||||||| ||||||||    ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  3332272 taaattaatcaaatggtccctcaactaattaac-agttttcattttggtcccataaattctaaaatcatcaatttggtccctcaacgtttgctccgtta 3332175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 2414863 - 2414952
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||  |||||||||||  || ||||||||||| |||||||||||||||||| |||||||| | ||||||||||| ||||||    
T  2414863 gttaactttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccatagatcctattaattttcttaatttaaaccgtttga 2414952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 22537703 - 22537767
Alignment:
Q  181 ggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  22537703 ggtgaaccaaccttaatagtgatccaccatagatcctattaattattttaatttaaaccgtttga 22537767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 40811456 - 40811528
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||||||  ||||||||||||| ||||||    
T  40811456 atgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttga 40811528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 13564220 - 13564158
Alignment:
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||    
T  13564220 aatgtctatggtggatcatccttaagagtggtccaccatagatcctattaattattttaattt 13564158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 11502401 - 11502340
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||    
T  11502401 atgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattttaattt 11502340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 39981432 - 39981524
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| |||||| |||| | ||||||||||||||||  |||||||||| |||||||||| ||||||    
T  39981432 ctgttaactttaacccccaaatgtctatggtggaccaactttaaaaatggtccaccatagatccaattaattattctaatttaaaccgtttga 39981524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 41328334 - 41328426
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| | |||| |||| | |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  41328334 ctgttaactttaacccccaaatgtctatggtggaacaactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 41328426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 22336119 - 22336176
Alignment:
Q  177 ctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  22336119 ctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattttaattt 22336176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 22115163 - 22115105
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||||| ||||||  ||||||||||| ||| ||||||||||||||||||||||||||||    
T  22115163 tgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccataga 22115105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 33779090 - 33779036
Alignment:
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtcc 205  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||    
T  33779090 tggctgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtcc 33779036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 40509733 - 40509675
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||||| ||||||  ||||||||||| ||| ||||||||||||||||||||||||||||    
T  40509733 tgttaagtttaaccccaaatgtctatagtggaccaaccttaagagtggtccaccataga 40509675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 11501295 - 11501344
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggt 203  Q
    |||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  11501295 ctgttaactttaacttcaaatgtctatggtggaccaaccttaaaagtggt 11501344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 47454455 - 47454543
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||   |||||||||||||  ||||||||||||||||||||| | |||| | |||||||| | ||||||| ||| ||||||    
T  47454455 ttaactttaactctaaatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttga 47454543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 32256394 - 32256344
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtcca 206  Q
    |||||||||||| |||||||||||||||| |||||| |||| |||||||||    
T  32256394 gttaactttaacttcaaatgtctatggtggaccaacattaaaagtggtcca 32256344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 47060476 - 47060408
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaa 222  Q
    ||||||| ||||||  ||||||| ||||||| ||||||||||||| | |||||||||||| | ||||||    
T  47060476 ctgttaagtttaacaccaaatgtatatggtggaccaaccttaagaatagtccaccatagaccttattaa 47060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 3413648 - 3413707
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    ||||||| |||||| ||| |||||||||||| | ||| ||||||||| ||||||||||||    
T  3413648 ctgttaagtttaacttcagatgtctatggtggatcaatcttaagagttgtccaccataga 3413707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 30334624 - 30334558
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||| | |||||| ||||||   |||||||||||||| |||||||| |||||||||||||    
T  30334624 aaatgtctatggaggaccaactttaagaacagtccaccatagatcctattaatt-ttttaatttaaac 30334558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 40508510 - 40508585
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||| | ||| ||||||||| |||||||||||||   ||||||| ||| ||||| ||| ||||||    
T  40508510 caaatgtctatggtggatcaatcttaagagttgtccaccatagatttcattaattttttaaattttaaccgtttga 40508585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 22337370 - 22337292
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||| |||||| |||||||||||||||| |||||||||||  || || |||| |||| | |||||||| | |||||||    
T  22337370 gttaaatttaacttcaaatgtctatggtggaccaaccttaaatgtagtacaccgtagaccttattaattttgttaattt 22337292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 29589352 - 29589286
Alignment:
Q  72 agttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttatt 138  Q
    ||||||||||||||| | | || | |||||||||||| |||| ||||||||| ||||||| ||||||    
T  29589352 agttttcattttggtccaataagtcttaaaatcatcattttgctccctcaacttttgctccgttatt 29589286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 44376804 - 44376711
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctc 131  Q
    ||||||||||  |||||||||| |||||||||   | ||||  ||||||| ||| || |||||||||||||| |||||||||| ||| |||||||    
T  44376804 ctaaattaatcaaatggtccctcaactaatttcgaatttttg-ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctc 44376711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 44385671 - 44385578
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctc 131  Q
    ||||||||||  |||||||||| |||||||||   | ||||  ||||||| ||| || |||||||||||||| |||||||||| ||| |||||||    
T  44385671 ctaaattaatcaaatggtccctcaactaatttcgaatttttg-ttttggtcccataacttttaaaatcatcattttggtcccttaacttttgctc 44385578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 47059241 - 47059318
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaa--ttattttaatttaaactgtttga 245  Q
    |||| |||||||||| | ||||||||||||| | |||||||||| | ||||||  || ||||||||||||| ||||||    
T  47059241 caaaagtctatggtggagcaaccttaagagtagcccaccatagaccttattaatttttttttaatttaaaccgtttga 47059318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 44554764 - 44554688
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||  ||||||||||||||| |||||| || | | ||||||||| |||||| |||||||| | |||||||    
T  44554764 ttaactttaactccaaatgtctatggtggaccaacatt-ataatggtccaccgtagatcttattaattttgttaattt 44554688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 13562938 - 13562986
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggt 203  Q
    ||||||||||||| ||||||||||||  || ||||||||||| ||||||    
T  13562938 tgttaactttaacttcaaatgtctataatggaccaaccttaaaagtggt 13562986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 46835838 - 46835878
Alignment:
Q  200 tggtccaccatagatcatattaattattttaatttaaactg 240  Q
    ||||| |||||| ||| ||||||||||||||||||||||||    
T  46835838 tggtctaccatatatcctattaattattttaatttaaactg 46835878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 48312735 - 48312691
Alignment:
Q  72 agttttcattttggttccacaaattttaaaatcatcaatttggtc 116  Q
    ||||||||||||||| ||| |||| |||||||||||| |||||||    
T  48312735 agttttcattttggtcccataaatcttaaaatcatcattttggtc 48312691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 9220576 - 9220366
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||||||||||||||| |||||||||   ||||||||||||| | ||| || | || ||||||  | |||||||||||||| ||||||||||||    
T  9220576 ctaaattaattcaatggtccctcaactaatttcc-agttttcattttgttcccataagtcttgaaatcagaattttggtccctcaacttttgctctgtta 9220478  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaacctt---aagagtggtccaccatagatcatattaattattttaatt 233  Q
    |||||||||||| || | ||||||||||||| |||||||||||||||| |||||| ||   ||||||||||| ||||| ||| |||||||||||||||||    
T  9220477 ttcaaaaaagtccctcgttgttaactttaacctcaaatgtctatggtggaccaacattaagaagagtggtcccccataaatcttattaattattttaatt 9220378  T
Q  234 taaactgtttga 245  Q
    ||||| ||||||    
T  9220377 taaaccgtttga 9220366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 1102632 - 1102825
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| |||||||||| || |||| ||| ||||| ||| || |  |||||||| || || ||||||||||||||| ||| |||  ||||||| ||| |    
T  1102632 tggtcccataactaatttgtt-gtttacatattggtcccataactcgtaaaatcaacatttaggtccctcaacgttttctccgttcatcaaaaaggtccc 1102730  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    || ||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  1102731 tgactgttaactttaaccccaaatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttga 1102825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 238
Target Start/End: Complemental strand, 4127334 - 4127169
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaa 172  Q
    |||||||||||||| ||| || |  |||||| | |  |||||||| ||||||||||||| |||| || ||||||||||| || ||||||||||||  |||    
T  4127334 gttttcattttggtcccataactcgtaaaattaacgttttggtccttcaacgtttgctccgttagtctaaaaagtctcttgccgttaactttaaccccaa 4127235  T
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||| |  | ||| ||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  4127234 atgtctatgatagatcaatcttaaaagtggtccaccatagatcctgttaattaatttaatttaaac 4127169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 10735798 - 10735963
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaa 172  Q
    |||||||||||||| ||| || |  |||||||| |  |||||||||||    ||||||| |||| ||||||| ||| ||  | ||||||||||||  |||    
T  10735798 gttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttagtcaaaaaggtccctaaccgttaactttaactccaa 10735897  T
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    || ||||||||| |||||| |||| ||  |||||||||||||||||||||||||||||||||||||    
T  10735898 atatctatggtggaccaacgttaacagcagtccaccatagatcatattaattattttaatttaaac 10735963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 30859151 - 30859079
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  30859151 atgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 30859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 30910878 - 30910950
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  30910878 atgtctttggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 30910950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 39603990 - 39604062
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||  ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||    
T  39603990 atgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattttaatttaaactgtttga 39604062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 11262532 - 11262593
Alignment:
Q  177 ctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  11262532 ctatggtggaccaaccttaagagtggtccaccatagatcctattaattattataatttaaac 11262593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 1010363 - 1010291
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||||||||  ||||||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattattt 1010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 8521372 - 8521444
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattattt 8521444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 22047869 - 22047941
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| | |||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||    
T  22047869 atgtctatggtggatcaaccttaagagtggtccaccataaatcctatgaattattttaatttaaaccgtttga 22047941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 27705296 - 27705224
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  27705296 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaatatttttaatttaaaccgtttga 27705224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 1009325 - 1009375
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  1009325 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 1009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 33173963 - 33173901
Alignment:
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||||||||| ||||||||    
T  33173963 tggctgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccataga 33173901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 325186 - 325095
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||   |||||||||||||| ||||||||||| ||||||||| | |||| | |||||||| | ||||||| ||| ||||||    
T  325186 ctgttaactttaactctaaatgtctatggtggaccaaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttga 325095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 22308798 - 22308715
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||| ||||||  ||||||||||||||| ||| ||||||||||||||||||||||||   |||||| | ||||||| |||||    
T  22308798 tgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttttaatgtaaac 22308715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 36898980 - 36898897
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||||||| |||||| | |||||||  |||||||||| ||| |||||||||||||  | |||||||||||| |||||||    
T  36898980 tgttaactttaacctcaaatatttatggtggcccaaccttaaaagtagtccaccatagattctgttaattattttagtttaaac 36898897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 35081435 - 35081357
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||||||||| |||||||||||| ||| | ||||||||||||| |||||||||| | | || ||||| |||||||||    
T  35081435 gttaactttaacctcaaatgtctatagtggatcaaccttaagagttgtccaccataaaccttaataatttttttaattt 35081357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 30912162 - 30912084
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatt 233  Q
    |||||||||||||  ||||| ||||||||| ||||||||||| |||||| || |||||| | |||||||| | ||||||    
T  30912162 tgttaactttaactccaaatatctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaatt 30912084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 13520760 - 13520711
Alignment:
Q  193 ttaagagtggtccaccatagatcatattaattattttaatttaaactgtt 242  Q
    ||||||||||| ||||||||||| ||||||||| ||| ||||||||||||    
T  13520760 ttaagagtggttcaccatagatcctattaattaatttgatttaaactgtt 13520711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 17420342 - 17420395
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaat 232  Q
    ||||||||||||||||||||||||||  || ||||||  ||||||||||||||||    
T  17420342 tatggtgaaccaaccttaagagtggt-tactatagattctattaattattttaat 17420395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 40058148 - 40058222
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| ||||||||||| |||  ||| |||||||||||| | |||||| | ||||| ||| ||||||||||    
T  40058148 aaatgtctaaggtgaaccaactttataagtagtccaccatagaccttattaaatcttttatttttaactgtttga 40058222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 324172 - 324225
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    |||||||||||||| |||||| |||| ||||||||| |||||| | ||||||||    
T  324172 aaatgtctatggtggaccaactttaatagtggtccatcatagaccttattaatt 324225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 24316241 - 24316192
Alignment:
Q  99 aaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtc 148  Q
    ||||||| || |||||| ||||||  ||||||||||||||||||||||||    
T  24316241 aaaatcaacactttggttcctcaatttttgctctgttattcaaaaaagtc 24316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 41144620 - 41144451
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| ||| |||||| || |||||||||||||| ||| ||||| |||||||| |  ||||||||||     ||||||| |||| ||||||| ||| |    
T  41144620 tggtcccctaattaatttgtt-gttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttagtcaaaaaggtc-c 41144523  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    || | ||||||||||||  ||||| | |||| || | ||||||||| | || ||||||||||||| ||||||||    
T  41144522 tgacggttaactttaaccccaaatatatatgatggatcaaccttaa-attgatccaccatagatc-tattaatt 41144451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 15548374 - 15548443
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatatta----attattttaatttaaac 238  Q
    |||||| ||||| ||||||||||||| || ||||||||| ||| |||||    |||||||||||||||||    
T  15548374 atgtctctggtggaccaaccttaagaatgatccaccataaatcctattaattaattattttaatttaaac 15548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 30857917 - 30857965
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtc 204  Q
    |||||||||||| | ||||||||||| || ||||||||||| |||||||    
T  30857917 gttaactttaactttaaatgtctatgatggaccaaccttaaaagtggtc 30857965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 44498460 - 44498668
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| || ||||||   ||||||| ||||||| ||| || | |||||||||||| |||||||||||||| ||||||||||||    
T  44498460 ctaaattaatgaaatggtccctcaattaatttcg-agttttcgttttggtcccataactcttaaaatcatcattttggtccctcaacttttgctctgtta 44498558  T
Q  137 ttcaaaaaa-gtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattta 235  Q
    ||||||||| |||  || | |||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |    
T  44498559 ttcaaaaaaagtcattgacggttaactttaactttaaatgtctatggtggatcaaccttaagagtggtccaccatagatcctattaattattttaattaa 44498658  T
Q  236 aactgtttga 245  Q
    ||| ||||||    
T  44498659 aaccgtttga 44498668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 56085381 - 56085554
Alignment:
Q  72 agttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtca 171  Q
    |||||||||||||||  || || | |||||||||||| ||||||||||||| |||||||  |||||||||    |||  |||||||||||||||||  ||    
T  56085381 agttttcattttggtctcataagtcttaaaatcatcattttggtccctcaatgtttgcttcgttattcaatttggtccttggctgttaactttaacccca 56085480  T
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  56085481 aatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 56085554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 26629805 - 26629997
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||||||| ||| || || |||||||||||||| ||| || |  |||||||| || |||||||||||||||||||||| |||| ||||||| |||      
T  26629805 tggtcccttaagtaaattgtt-gttttcattttggtcccataactcataaaatcaacattttggtccctcaacgtttgctccgttaatcaaaaaggtcca 26629903  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    || | ||||||||||||  ||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  26629904 tgacggttaactttaaccccaaatgtttatggtgaaccaa-cttaagagtggtccaccataggtcctattaattattttaatgtaaactgtttga 26629997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 4871494 - 4871694
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||||||||| |||| ||||||||    | |||||||||||||  || || | |||||||||||||||| |||| |||| |||||||| ||||    
T  4871494 ctaaattaattcaatggcccctcaactaattcccaa-ttttcattttggtctcataagtcttaaaatcatcaatttagtccttcaatgtttgctccgtta 4871592  T
Q  137 ttcaaaaaagtctctggctgttaactttaacg-tcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattta 235  Q
    ||||||||  || ||| | ||||||||||||  |||||||||||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  4871593 ttcaaaaagatc-ctgaccgttaactttaaccctcaaatgtctatggtggaccaacctaaagagtggtccaccgtagatcctattaattattttaattta 4871691  T
Q  236 aac 238  Q
    |||    
T  4871692 aac 4871694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 19750409 - 19750211
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||| ||||||||||| ||||||||  | ||||||||||||| | ||| || |||||||||||||| ||| |||| ||||| ||||||  ||||    
T  19750409 ctaaattaatccaatggtccctcaactaattact-agttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgtta 19750311  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    || |||||||||  || | |||||||||||| | |||||||||||||| || || ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  19750310 ttaaaaaaagtca-tgaccgttaactttaaccttaaatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaa 19750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 19789397 - 19789595
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    |||||||||| ||||||||||| ||||||||  | ||||||||||||| | ||| || |||||||||||||| ||| |||| ||||| ||||||  ||||    
T  19789397 ctaaattaatccaatggtccctcaactaattact-agttttcattttgatcccataagttttaaaatcatcattttagtccttcaacttttgcttcgtta 19789495  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    || |||||||||  || | |||||||||||| | |||||||||||||| || || ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  19789496 ttaaaaaaagtca-tgaccgttaactttaaccttaaatgtctatggtggacaaatcttaaaagttgtccaccatagatcctattaattattttaatttaa 19789594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 1519825 - 1520017
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtctc 150  Q
    ||||||| |||||||||| |  |||||||||||||| ||| || |  |||||||| ||  ||||||||||||| |||||||||||| ||||||| ||  |    
T  1519825 tggtcccctaactaatttgtc-gttttcattttggtcccataattcgtaaaatcaacatattggtccctcaacatttgctctgttagtcaaaaaggtacc 1519923  T
Q  151 tggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    || ||||||||||||||  ||||||| ||||||  | | ||||| | |||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  1519924 tgactgttaactttaaccccaaatgtttatggtagatc-acctttaaagtgatccaccatagatcctattaattattttaatttaaaccgtttga 1520017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 36845444 - 36845617
Alignment:
Q  73 gttttcattttggttccacaaattttaaaatcat-caatttggtccctcaacgtttgctctgttattcaaaaaagtctctggctgttaactttaacgtca 171  Q
    ||||||||||| |||||| || |  ||||||||  || |||||| ||||||||||||||| |||| ||||| | ||| ||| | || |||||||||   |    
T  36845444 gttttcattttagttccataactcataaaatcaaacattttggttcctcaacgtttgctccgttaatcaaagaggtccctgacggtcaactttaacccta 36845543  T
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||| |||| |  |||||| |||||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  36845544 aatgtttatgatagaccaacattaagagtggtccaccataggtcctattaattattttaatgtaaactgtttga 36845617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 2312461 - 2312389
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  2312461 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttga 2312389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 27850918 - 27850846
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  27850918 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttga 27850846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 45535046 - 45535251
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  ||| |||||| |||||||| |  ||||||||||||||| ||| || | ||||||||||||||   |||||||||| ||||||||||||    
T  45535046 ctaaattaatcaaatagtccctcaactaattctc-agttttcattttggtcccataagtcttaaaatcatcaatcgagtccctcaacttttgctctgtta 45535144  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    ||| |||||||  ||| | |||||||||||| | |||||||||  ||||| ||     ||   |||||||||||||||| |||||||| |||||||||||    
T  45535145 ttc-aaaaagttcctgaccgttaactttaacttgaaatgtctaaagtgaaacacaaacaatgttggtccaccatagatcctattaatt-ttttaatttaa 45535242  T
Q  237 actgtttga 245  Q
    |||||||||    
T  45535243 actgtttga 45535251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 13165611 - 13165702
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||    
T  13165611 ctgttaagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcattaattattttaatttaaaccgtttga 13165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 52240013 - 52240085
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  52240013 atgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttga 52240085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 15450054 - 15449984
Alignment:
Q  174 tgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttg 244  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||    
T  15450054 tgtctatcgtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaactgtttg 15449984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 40723343 - 40723417
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 228  Q
    ||||||| |||||| |||||||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  40723343 ctgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattattt 40723417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 11968647 - 11968712
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  11968647 atgtctatgatggaccaaccttaagagtggtccatcatagatcctattaattattttaatttaaac 11968712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 7707725 - 7707797
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| ||||  |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  7707725 atgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 7707797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 23104123 - 23103918
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| |||||||| |  |||||||||||||||  || || | ||||||||||||||   |||||||||| ||||||| ||||    
T  23104123 ctaaattaatcaaatggtccctcaactaattctc-agttttcattttggtctcataagtcttaaaatcatcaatcgagtccctcaacttttgctccgtta 23104025  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaa 236  Q
    ||||||||  || ||| | |||||||||||| | |||||||||  ||||| ||     ||   |||||||||||||||| |||||||| |||||||||||    
T  23104024 ttcaaaaagatc-ctgaccgttaactttaacttgaaatgtctaaagtgaaacacaaacaatgttggtccaccatagatcctattaatt-ttttaatttaa 23103927  T
Q  237 actgtttga 245  Q
    || ||||||    
T  23103926 accgtttga 23103918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 4872347 - 4872262
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaac 123  Q
    |||||||||| ||||||||||| |||||||| |  ||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  4872347 ctaaattaatccaatggtccctcaactaattctc-agttttcattttggtcccataagtcttaaaatcatcaatttggtccctcaac 4872262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 1794548 - 1794620
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||| ||||||| |||||||||||||||||||||||||||| | |||||| | ||||||||||||| ||||||    
T  1794548 atgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 1794620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 26496310 - 26496218
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| ||| || |||| | |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  26496310 ctgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 26496218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 49896569 - 49896493
Alignment:
Q  169 tcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| |||||||| |||||||| |||||||||||||  |||||| | |||||||||||||||||||| ||||||    
T  49896569 tcaaatggctatggtggaccaacctaaagagtggtccactgtagatcctgttaattattttaatttaaaccgtttga 49896493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 52138824 - 52138702
Alignment:
Q  125 tttgctctgttattcaaaaaagtctctggctgttaactttaacgtc-aaatgtct--atggtgaaccaaccttaagagtggtccaccatagatcatatta 221  Q
    ||||||| |||  ||||||||||| ||| ||||||||||||||  | ||||||||  |||||  |||||| |||||| |||||||||||||||| |||||    
T  52138824 tttgctccgttggtcaaaaaagtc-ctgactgttaactttaacccctaaatgtctctatggtagaccaactttaagaatggtccaccatagatcctatta 52138726  T
Q  222 attattttaatttaaactgtttga 245  Q
    |||||| |||||||||| ||||||    
T  52138725 attattctaatttaaaccgtttga 52138702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 6348272 - 6348339
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaat 223  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| |||| | |||||||    
T  6348272 gttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaat 6348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 28590880 - 28590813
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||| ||||||||| | || |||||||| |||||||||||||||| ||||||||||||    
T  28590880 tatggtgaaccaactttaagagtgattcatcatagatcctattaattattttaatataaactgtttga 28590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 22069330 - 22069432
Alignment:
Q  133 gttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaat 232  Q
    |||||||||| || ||  ||| ||||||||||||| |||||||||||||||| || |||||||| |||||| |||||||||   |||||||  |||||||    
T  22069330 gttattcaaataaatcaatggttgttaactttaacttcaaatgtctatggtggacgaaccttaaaagtggttcaccatagactctattaatatttttaat 22069429  T
Q  233 tta 235  Q
    |||    
T  22069430 tta 22069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 42810184 - 42810119
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||||||||| ||||||||| |||||||||||| | |||||| | |||||||||||||    
T  42810184 atgtctatggtgaaccaatcttaagagtagtccaccatagaccttattaaattttttaatttaaac 42810119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 4714139 - 4714195
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccataga 4714195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 56157493 - 56157405
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||| ||||||||||   ||| ||||| |||||||||| ||||||||||||| |||||||| |||||| || |||| |||||    
T  56157493 ttaactttaacctcaaatgtctcaagtggaccaatcttaagagtgttccaccatagatcctattaatttttttaactttaactatttga 56157405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 41349511 - 41349437
Alignment:
Q  171 aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| ||||||| ||| |||||||  |||||| ||||||||||||||| ||||| |||||||| ||||||    
T  41349511 aaatgtctaaggtgaactaactttaagagatgtccactatagatcatattaatcatttttatttaaaccgtttga 41349437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 6349532 - 6349457
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatat---taattattttaatttaaactgtttga 245  Q
    |||| ||||||| | |||||||||||||||||||||||||| |||||   ||  ||||||||||||||||||||||    
T  6349532 atgtatatggtggatcaaccttaagagtggtccaccatagaccatatatatatatattttaatttaaactgtttga 6349457  T

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Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 53432180 - 53432269
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||| ||||||  |||||||||||||||||||||| ||||||||||  ||||||| | | |||||||| ||| ||||| ||| ||||||    
T  53432180 gttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttga 53432269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 7053292 - 7053376
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatg-gtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    ||||||| |||||  || |||||||||  ||| ||||| |||||||||| ||||||||||||| |||||||| ||||||||||||    
T  7053292 ctgttaagtttaatctcgaatgtctatttgtggaccaatcttaagagtgatccaccatagatcctattaatttttttaatttaaa 7053376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 13166769 - 13166710
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    ||||||| |||||| ||||||||||||| || ||||||| |||||||| |||||||||||    
T  13166769 ctgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccataga 13166710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 52963684 - 52963743
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    ||||||||||||||  ||||||||||||||| |||| |||||| ||||||||| ||||||    
T  52963684 ctgttaactttaactccaaatgtctatggtggaccagccttaaaagtggtccatcataga 52963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 8682845 - 8682768
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaac-cttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||| ||||||  ||||||||||||||| || ||  ||||||||||||||| ||||||||||||||||| |||||||||    
T  8682845 ttaagtttaacaccaaatgtctatggtggactaaatcttaagagtggtccatcatagatcatattaatt-ttttaattt 8682768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 36243606 - 36243695
Alignment:
Q  125 tttgctctgttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagat 214  Q
    |||||||||||| ||||||| ||   | | ||||||||||||| ||||||||||   ||| ||||| |||||||||| ||||||||||||    
T  36243606 tttgctctgttagtcaaaaaggttcttagatgttaactttaacctcaaatgtcttaagtggaccaatcttaagagtgttccaccatagat 36243695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 53435751 - 53435694
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    ||||| |||||| | |||||||||||||  ||||||||||||||||||||||| ||||    
T  53435751 gttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccaccgtaga 53435694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 34326868 - 34326923
Alignment:
Q  179 atggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    |||||| |||||| |||||||||||| || ||||||| |||||||||||| |||||    
T  34326868 atggtggaccaactttaagagtggtctactatagatcctattaattatttaaattt 34326923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 44500106 - 44499996
Alignment:
Q  31 aaaagtctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgct 130  Q
    ||||| ||||||||||  ||| |||||| || ||||||   ||||||| ||||||| ||| || | |||||||||||| |||||||||| ||| ||||||    
T  44500106 aaaagcctaaattaatgaaattgtccctcaattaatttcg-agttttcgttttggtcccataactcttaaaatcatcattttggtcccttaacttttgct 44500008  T
Q  131 ctgttattcaaa 142  Q
    | |||| |||||    
T  44500007 ccgttagtcaaa 44499996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 7708788 - 7708710
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatt 233  Q
    |||||||||||||   |||| ||||||||| ||||||||||| |||||| || |||||| | |||||||| | ||||||    
T  7708788 tgttaactttaactctaaatatctatggtggaccaaccttaaaagtggtacatcatagaccttattaattttgttaatt 7708710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 23202002 - 23202043
Alignment:
Q  193 ttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||| |||||||| || ||||||||||||||||||    
T  23202002 ttaagagtggtacaccataggtcctattaattattttaattt 23202043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 40792866 - 40792914
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtc 204  Q
    |||||||||||| | |||||||||| ||| ||||||||||| |||||||    
T  40792866 gttaactttaactttaaatgtctatagtggaccaaccttaaaagtggtc 40792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 11967334 - 11967423
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| |||||||||||| ||| ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  11967334 gttaactttaacctcaaatgtctattgtggaccaaccttgagaggggtccatcatagatcatattaattattttaatttaaactgtttga 11967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 7311705 - 7311633
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  7311705 atgtctatggtgaaccaaccttaagagtggtccaccataaatcctattaattattttaatttaaaccgtttga 7311633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 12669839 - 12669930
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | ||||| |||||| |||||    
T  12669839 ctgttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccatagatcatattatttttattaatataaactatttga 12669930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 17837752 - 17837824
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  17837752 atgtctatggtggacaaacattaagagtggtccaccatagatcctattaattattttaatttcaaccgtttga 17837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 18346722 - 18346658
Alignment:
Q  181 ggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||    
T  18346722 ggtgaaccaaccttaagagtggtccactataaatcctattaattattttaatttaaaccgtttga 18346658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 11722901 - 11722993
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||| ||| || |||| | |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  11722901 ctgttaactttaacccccaaatgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattattctaatttaaaccgtttga 11722993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 29381710 - 29381638
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| ||||| || ||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||    
T  29381710 atgtctgtggtggacaaaccttaagagtgatccaccatagatcctattaattattttaatttcaaccgtttga 29381638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 5187601 - 5187530
Alignment:
Q  174 tgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||| ||||||||||    
T  5187601 tgtctatagtggaccaaccttaaaagtggttcaccatagatcctattaattatattaatttcaactgtttga 5187530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 18242415 - 18242323
Alignment:
Q  48 caatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgttattcaa 141  Q
    ||||||||||| ||||||||||| | |||| ||| |||| ||| || | ||||||||||||||||||||||||||| |||||||  ||||||||    
T  18242415 caatggtccctcaactaatttttaattttt-attctggtcccataagtcttaaaatcatcaatttggtccctcaacttttgctccattattcaa 18242323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 23392365 - 23392422
Alignment:
Q  188 caaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  23392365 caaccttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 23392422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 7310389 - 7310443
Alignment:
Q  152 ggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtcca 206  Q
    ||||||||| ||||||  ||||||||||||||||||||||||||| | |||||||    
T  7310389 ggctgttaagtttaactccaaatgtctatggtgaaccaaccttaaaaatggtcca 7310443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 23397353 - 23397275
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||| |||||| |||||||||||||||| ||||||||||| ||| ||||||| || | | |||||||| | |||||||    
T  23397353 gttaaatttaacttcaaatgtctatggtggaccaaccttaaaagtagtccaccgtataccttattaattttgttaattt 23397275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 18240461 - 18240498
Alignment:
Q  99 aaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  18240461 aaaatcatcaatttggtccctcaacttttgctctgtta 18240498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 32507026 - 32506969
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccata 211  Q
    ||||||| ||||||  ||||| ||||||||| ||||||||||||||||||| ||||||    
T  32507026 ctgttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtctaccata 32506969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 21035760 - 21035711
Alignment:
Q  99 aaaatcatcaatttggtccctcaacgtttgctctgttattcaaaaaagtc 148  Q
    ||||||| || |||||| ||||||  ||||||||||||||||||||||||    
T  21035760 aaaatcaacactttggttcctcaatttttgctctgttattcaaaaaagtc 21035711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 5186685 - 5186725
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaa 196  Q
    |||||||||||| |||||| |||||||||||| ||||||||    
T  5186685 gttaactttaacttcaaatatctatggtgaacaaaccttaa 5186725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 30231492 - 30231559
Alignment:
Q  51 tggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccct 119  Q
    |||||||||||||||||| || |||||||||||||| ||| || || |||||||| |  ||||||||||    
T  30231492 tggtcccttaactaatttgtt-gttttcattttggtcccataacttctaaaatcaacgttttggtccct 30231559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 238
Target Start/End: Original strand, 127551 - 127633
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  127551 gttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccatagatcctattaatgtttttaatttaaac 127633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 54164 - 54092
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  54164 atgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaactgtttga 54092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 43554 - 43482
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  43554 atgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttga 43482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 42641841 - 42641769
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||  |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  42641841 atgtctatggtgggccaaccttaagagtggtctaccatagatcctattaattattttaatttaaactgtttga 42641769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 43033198 - 43033281
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||| |||||| |||||||||||||||  |||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  43033198 tgttaagtttaacctcaaatgtctatggtagaccaaccttaagagtggtccaccataaaccctattaattattttaatttaaac 43033281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 30748596 - 30748686
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| |||||| |||||| | | |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  30748596 tgttaagtttaacctcaaatatttgtggtgaacaaaccttaagagtggcacaccatagatcatattaattattttaatttaaattgtttga 30748686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 34464063 - 34464175
Alignment:
Q  133 gttattcaaaaaagtctctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaat 232  Q
    |||| ||||| || |||||| ||||||| ||||||  ||||||||||| ||  |||||||||||||||||||||||||||| | |||||  | |||||||    
T  34464063 gttaatcaaataaatctctgactgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaat 34464162  T
Q  233 ttaaactgtttga 245  Q
    |||||||||||||    
T  34464163 ttaaactgtttga 34464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 34467618 - 34467713
Alignment:
Q  150 ctggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| | |||||| ||||||||||||| || || ||||||||||||||||||||||| | | |||||| | ||||||||||||||||||||    
T  34467618 ctggctgttgagtttaacttcaaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaatttaaactgtttga 34467713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 23233812 - 23233671
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaacgtttgctctgtta 136  Q
    ||||||||||  |||||||||| ||||||||    | ||||||||||||| ||| || | |||||||||||| |||||||||||||| ||||||| ||||    
T  23233812 ctaaattaatcaaatggtccctcaactaattacaaa-ttttcattttggtcccataagtcttaaaatcatcattttggtccctcaacttttgctccgtta 23233714  T
Q  137 ttcaaaaaagtctctggctgttaactttaacgtcaaatgtcta 179  Q
    |||||||| |||  | || |||||||||||| | |||||||||    
T  23233713 ttcaaaaaggtcattagccgttaactttaactttaaatgtcta 23233671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 8320895 - 8320964
Alignment:
Q  176 tctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  8320895 tctatggtggaccatccttaagagcggtccaccatagattatattaattattttaatttaaaccgtttga 8320964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 11317348 - 11317284
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaa 237  Q
    |||||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11317348 atgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattattttaatttaaa 11317284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29219522 - 29219594
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  29219522 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 29219594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29332821 - 29332893
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  29332821 atgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 29332893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 32469285 - 32469350
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||| ||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32469285 atgtatatggtggaccaactttaagagtggtccactatagatcctattaattattttaatttaaac 32469350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 18616985 - 18616913
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| ||||  ||||| |||||||||||||||||| |||||||||||||||||| ||| ||||||    
T  18616985 atgtctatggtggaccagtcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttga 18616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 30749323 - 30749241
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||||||| ||| | ||  | ||||||||||||||||||||||    
T  30749323 tgttaagtttaacctcaaatgtctatggt-aaccaaccttaagagtggttcactacagggcctattaattattttaatttaaac 30749241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 34513537 - 34513462
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| ||||||  |||||||||||||||| ||||||||||| | |||||||| ||||||||||||| ||||||    
T  34513537 caaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttga 34513462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 245
Target Start/End: Complemental strand, 4921059 - 4920967
Alignment:
Q  154 ctgttaactttaacgtc-aaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||  | |||||||||||||  |||||| |||| | |||||||||||| ||| ||||||||||| |||||||||| ||||||    
T  4921059 ctgttaactttaacccccaaatgtctatggtagaccaactttaaaaatggtccaccataaatcctattaattattctaatttaaaccgtttga 4920967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 6030450 - 6030378
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||| |||| |||||||||||||||| || |||||||||| |||||||  ||||||||||||| ||||||    
T  6030450 atgtctacggtggaccaaccttaagagtgatctaccatagatcctattaatatttttaatttaaaccgtttga 6030378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 16295218 - 16295150
Alignment:
Q  153 gctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatatta 221  Q
    ||||||||||||||| | |||||| | ||||| ||||||||||| |||||||||||||||||| |||||    
T  16295218 gctgttaactttaactttaaatgtttttggtggaccaaccttaacagtggtccaccatagatcctatta 16295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 43034455 - 43034400
Alignment:
Q  169 tcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    |||||||||||||||| | |||| ||||||||||||||||||||||| ||||||||    
T  43034455 tcaaatgtctatggtggatcaactttaagagtggtccaccatagatcctattaatt 43034400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 35903665 - 35903714
Alignment:
Q  196 agagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  35903665 agagtggtccaccatagatcctattaaatattttaatttaaaccgtttga 35903714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 28611236 - 28611162
Alignment:
Q  170 caaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||||||||| ||| || |||| | |||||||| ||||||| ||||||||| |||||||||||| ||||||    
T  28611236 caaatgtctatggtggaccgactttaaaaatggtccactatagatcctattaatta-tttaatttaaaccgtttga 28611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 1085348 - 1085307
Alignment:
Q  193 ttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  1085348 ttaagagtggtacaccatagatcctattaattattttaattt 1085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 34512946 - 34513019
Alignment:
Q  172 aatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||| ||||||| | ||||| |||||||||||||||||| | | |||||| | |||||||||||||| |||||    
T  34512946 aatgtatatggtggatcaaccataagagtggtccaccatataccttattaaattttttaatttaaactatttga 34513019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 11547796 - 11547867
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||||||  || |||||||||| ||||||||||||||||||| |||||| | || |||||||||| ||||||    
T  11547796 atgtctatcatggaccaaccttaggagtggtccaccatagatcgtattaaat-ttataatttaaaccgtttga 11547867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 17459390 - 17459462
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||||||||| || || ||||| |||| || | |||||||| ||||||||||| |||||||||| ||||||    
T  17459390 atgtctatggtggacgaatcttaaaagtgatctaacatagatcctattaattattataatttaaaccgtttga 17459462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 12359680 - 12359618
Alignment:
Q  153 gctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatc 215  Q
    ||||||||||||||| | || ||||||||||| | ||| | |||||||| |||||||||||||    
T  12359680 gctgttaactttaaccttaagtgtctatggtggatcaatcgtaagagtgatccaccatagatc 12359618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 23231540 - 23231625
Alignment:
Q  37 ctaaattaattcaatggtcccttaactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccctcaac 123  Q
    ||||||||||  |||||||||| ||||||||    |||||| |||||||| ||| || | |||||||||||| ||||||||||||||    
T  23231540 ctaaattaatcaaatggtccctcaactaattacg-agtttttattttggtcccataagtcttaaaatcatcattttggtccctcaac 23231625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 26205134 - 26205183
Alignment:
Q  162 tttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccata 211  Q
    |||||| ||||||||||| |||||||||  ||||| ||||||||||||||    
T  26205134 tttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccata 26205183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 7983690 - 7983630
Alignment:
Q  162 tttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaa 222  Q
    |||||| ||||||||||| |||||||||   ||||  ||||||||||||||||| ||||||    
T  7983690 tttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaa 7983630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 11316046 - 11316118
Alignment:
Q  152 ggctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaatt 224  Q
    ||||||||| |||||   ||||||||||||||| | ||||||||| | ||||||||| |||| | ||||||||    
T  11316046 ggctgttaagtttaattccaaatgtctatggtggatcaaccttaaaaatggtccaccgtagaccttattaatt 11316118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 17460683 - 17460635
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtc 204  Q
    |||||||||||| | |||||||||||||| ||||| ||||| |||||||    
T  17460683 gttaactttaactttaaatgtctatggtggaccaatcttaaaagtggtc 17460635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 25561753 - 25561694
Alignment:
Q  59 taactaattttttagttttcattttggttccacaaattttaaaatcatcaatttggtccct 119  Q
    |||||||||| || |||||||||||||| ||| ||||| |||||||| | |||||||||||    
T  25561753 taactaatttgtt-gttttcattttggtcccataaattctaaaatcaacgatttggtccct 25561694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 8188 - 8100
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    ||||| ||||||  ||||||||||||||| | |||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||    
T  8188 gttaattttaaccccaaatgtctatggtggatcaaccttaagag-ggtccatcatagattatattaattattttaatttaaaccgtttga 8100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 32686 - 32779
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatatta--attattttaatttaaactgtttga 245  Q
    |||||||||||||| | |||||||||||||| |||||||||| |||||||||| |||||||| |||||   || ||||||||||||| ||||||    
T  32686 ctgttaactttaaccttaaatgtctatggtggaccaaccttaggagtggtccatcatagatcctattattttttttttaatttaaaccgtttga 32779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 673 - 590
Alignment:
Q  162 tttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaactgtttga 245  Q
    |||||| |||||||| |||  || |||||||||||||||||||||||||||| | |||||| | ||||||||||||| ||||||    
T  673 tttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttga 590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 124086 - 124152
Alignment:
Q  156 gttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaa 222  Q
    ||||| ||||||  ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  124086 gttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtccaccatagatcgtattaa 124152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 125212 - 125146
Alignment:
Q  173 atgtctatggtgaaccaaccttaagagtggtccaccatagatcatatt-aattattttaatttaaac 238  Q
    |||| |||| || ||||||||||| |||||||||||||||| | |||| |||| |||||||||||||    
T  125212 atgtatatgatggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaac 125146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 108654 - 108714
Alignment:
Q  178 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaatttaaac 238  Q
    ||||||| ||||||||||| |||||||||||||||||  ||||||||||| ||||||||||    
T  108654 tatggtggaccaaccttaaaagtggtccaccatagatgctattaattattataatttaaac 108714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 109743 - 109666
Alignment:
Q  157 ttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccatagatcatattaattattttaattt 234  Q
    ||||||||||| |||||||| ||||||| ||||||||||| | | ||||| | |||| | |||||||| | |||||||    
T  109743 ttaactttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtagaccttattaattttgttaattt 109666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 21244 - 21302
Alignment:
Q  155 tgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 213  Q
    |||||| ||||||  ||||||||||||||| ||||||||| ||||||||||||||||||    
T  21244 tgttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccataga 21302  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 63131 - 63074
Alignment:
Q  154 ctgttaactttaacgtcaaatgtctatggtgaaccaaccttaagagtggtccaccata 211  Q
    ||||||| |||||| ||||||||||||| || | ||| ||||||| ||||||||||||    
T  63131 ctgttaagtttaacttcaaatgtctatgatggatcaatcttaagaatggtccaccata 63074  T

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