View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5746_high_45 (Length: 342)
Name: NF5746_high_45
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 25526776 - 25526446
Alignment:
| Q |
1 |
acatataggagaatgggtaggaaagatgatgcttacatgttaaataacaaaatggccgaggctgagttgattaagaatggtccaacttggatcgaacttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25526776 |
acatataggagaatgggtaggaaagatgatgcttacatgttaaataacaaaatggccgaggctgagttgattaagaatggtccaactcggatcgaacttt |
25526677 |
T |
|
| Q |
101 |
gaaataagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526676 |
gaaataagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaa |
25526577 |
T |
|
| Q |
201 |
gctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25526576 |
gctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagcttc |
25526477 |
T |
|
| Q |
301 |
tatgcccttttagatccaaacaaacattttg |
331 |
Q |
| |
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| T |
25526476 |
tatgcccttttagatccaaacaaacattttg |
25526446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 67 - 342
Target Start/End: Complemental strand, 25534719 - 25534439
Alignment:
| Q |
67 |
ttgattaagaatggtccaacttggatcgaactttgaaataagaaga------atgatgaatcaaagggattctgaatccaatcccaaaaggaaagcacta |
160 |
Q |
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||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25534719 |
ttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcacta |
25534621 |
T |
|
| Q |
161 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534620 |
catcctaacatttaacagtaggacattttacataaactgagctacaccctaagcatattttgtctttgtacatcaatatttttgggggtctttaaatttt |
25534521 |
T |
|
| Q |
261 |
tcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttgtgatatttgct |
342 |
Q |
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| T |
25534520 |
tcagtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttgtgatatttgct |
25534439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 25515738 - 25515864
Alignment:
| Q |
67 |
ttgattaagaatggtccaacttggatcgaactttgaaa----taagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactaca |
162 |
Q |
| |
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|||||||||||||||| |||| ||||| ||||||||| |||||| || ||||||||| || |||||||||||||||||||||||||||||| | || |
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| T |
25515738 |
ttgattaagaatggtcaaactcggatcacactttgaaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgca |
25515837 |
T |
|
| Q |
163 |
tcctaacatttaacagtaggacatttt |
189 |
Q |
| |
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|||||||||||||||||| |||||||| |
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|
| T |
25515838 |
tcctaacatttaacagtatgacatttt |
25515864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 342
Target Start/End: Original strand, 25515876 - 25515988
Alignment:
| Q |
234 |
caatatttttgggggtctttaaatttttcagtgaatcctatattctgttctgtccaattgtagctt----ctatgcccttttagatccaaacaaacattt |
329 |
Q |
| |
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||||||||||| |||||| ||| ||||| | ||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| | | |
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| T |
25515876 |
caatatttttgagggtctgtaattttttaaatgaatcctatagtctgttctgtccaaatgtagctagctactatgccctttcagatccaaacaaaattgt |
25515975 |
T |
|
| Q |
330 |
tgtgatatttgct |
342 |
Q |
| |
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||||||||||||| |
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| T |
25515976 |
tgtgatatttgct |
25515988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 25541048 - 25540969
Alignment:
| Q |
263 |
agtgaatcctatattctgttctgtccaattgtagcttctatgcccttttagatccaaacaaacattttgtgatatttgct |
342 |
Q |
| |
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|||||||||||| ||||||||||| ||||| ||| ||||||| ||| ||||||||| |||| | |||||||||||||| |
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| T |
25541048 |
agtgaatcctattgtctgttctgtcagattgttgctactatgccatttcagatccaaataaacttgttgtgatatttgct |
25540969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 25541120 - 25541089
Alignment:
| Q |
158 |
ctacatcctaacatttaacagtaggacatttt |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
25541120 |
ctacatcctaacatttaacagtaggacatttt |
25541089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 7946712 - 7946623
Alignment:
| Q |
109 |
aagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcct-aacatttaacagtaggacattttacataaac |
197 |
Q |
| |
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||||| |||||||||||||||| |||| |||||||| ||||| ||| ||||| ||||| ||||||||| |||||||||||||||| |||| |
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| T |
7946712 |
aagaaagatgaatcaaagggatcctgattccaatccaaaaagaaaatcactaaatcctaaacatttaatagtaggacattttacacaaac |
7946623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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