View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5746_high_48 (Length: 330)
Name: NF5746_high_48
Description: NF5746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5746_high_48 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 16369806 - 16370101
Alignment:
| Q |
19 |
ttaaaatgaataaggaatataaattaataccttgtcatctatgtaggcaccccaaaatctagcactggctcgatcataagcatttgaaggaagaattgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16369806 |
ttaaaatgaataaggaatataaattaataccttgtcatctatgtaggcaccccaaaatctagcactggctcgatcataagcatttgaaggaagaattgag |
16369905 |
T |
|
| Q |
119 |
ggagtaccattatttttccaaacttcatcaatatattcaactattattgctgattcacaaatggctttatctccatgaatgagaactgggannnnnnngt |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16369906 |
ggagtgccattatttttccaaacttcatcaatatattcaactattattgctgattcacaaatggctttatctccatgaatgagaactgggatttttttgt |
16370005 |
T |
|
| Q |
219 |
atacaggattggactgaagaaacaaatcacttttggaattcaagttttctacaatgttctcataatccaaacctttaatggaaagggcaatttgtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16370006 |
atacaggattggactgaagaaacaaatcacttttggaattcaagttttctacaatgttctcataatccaaacctttgatggaaagggcaatttgtg |
16370101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 289
Target Start/End: Original strand, 16373952 - 16374212
Alignment:
| Q |
30 |
aaggaatataaattaataccttgtcatctatgtaggcac-cccaaaatctagcactggctcgatcataagcatttgaaggaagaattgagggagtaccat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16373952 |
aaggaatataaattaataccttgtcatcgatgtaggcaaacccaaaatttcgcaatggctcggtcataagcatttgaaggaagaattgagggagtaccat |
16374051 |
T |
|
| Q |
129 |
tatttttccaaacttcatcaatatattcaactatta-ttgctgattcacaaatggctttatctccatgaatgagaactgggannnnnnngtatacaggat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16374052 |
tatttttccaaacttcatcaatatattcaactattatttgctgattcacaaatggctttatctccatgaatgagaactgggattttttt-aatacaggat |
16374150 |
T |
|
| Q |
228 |
tggactgaagaaacaaatcacttttggaattcaagttttctacaatgttctcataatccaaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
16374151 |
tggactgaagaaacaaatcacttttggaattcatggtttctacaatgttctcatagtccaaa |
16374212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 20605687 - 20605753
Alignment:
| Q |
69 |
cccaaaatctagcactggctcgatcataagcatttgaaggaagaattgagggagtaccattattttt |
135 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
20605687 |
cccaaaatctagcactggctcggtcataagcatttgaaggaaggataaaaggagtaccattattttt |
20605753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 20605756 - 20605849
Alignment:
| Q |
176 |
caaatggctttatctccatgaatgagaactgggannnnnnngtatacaggattgg--actgaagaaacaaatcacttttggaattcaagttttc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||| | ||| |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
20605756 |
caaatggctttatctccatgaatgagaactgggatttttttgaatacaaggctgggtactgaaaaaataaatcacttttggaattcaagttttc |
20605849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University